Amycolatopsis acidiphila: LWP59_07265
Help
Entry
LWP59_07265 CDS
T07896
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aacd
Amycolatopsis acidiphila
Pathway
aacd03030
DNA replication
aacd03410
Base excision repair
aacd03420
Nucleotide excision repair
aacd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aacd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LWP59_07265 (ligA)
03410 Base excision repair
LWP59_07265 (ligA)
03420 Nucleotide excision repair
LWP59_07265 (ligA)
03430 Mismatch repair
LWP59_07265 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aacd03032
]
LWP59_07265 (ligA)
03400 DNA repair and recombination proteins [BR:
aacd03400
]
LWP59_07265 (ligA)
Enzymes [BR:
aacd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LWP59_07265 (ligA)
DNA replication proteins [BR:
aacd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LWP59_07265 (ligA)
DNA repair and recombination proteins [BR:
aacd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LWP59_07265 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LWP59_07265 (ligA)
MMR (mismatch excision repair)
DNA ligase
LWP59_07265 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LWP59_07265 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
HHH_8
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UIJ61419
LinkDB
All DBs
Position
1482996..1485113
Genome browser
AA seq
705 aa
AA seq
DB search
MSEAQDVTDVPAEVRERYGALADEVRGHQFRYYVLDSPTISDGQFDELLHRLEAMEAEYP
SLVTPESPTQNVGGTFSTEFAAYDHLERMLSLDNVFDTEEMLAWIERVEREVGGSTQYLA
ELKIDGLAINLLYEQGKLTRALTRGDGRTGEDVTLNVRTLDQVPDRLTGTDEFPVPALVE
VRGEVFFRVEDFLELNAKLVEAGKPPFANPRNTAAGSLRQKDPRVTRSRRLRLICHGLGR
REGFEPGRQSEAYDALRAWGLPVSTHTKVFTTAEEVLDHIRYWGEHRHDAEHEIDGIVIK
VDQVSLQRRLGTTSRAPRWAIAYKYAPEEAITKLLDIQVNVGRTGRVTPFAVMEPVKVAG
STVAMATLHNAEEVKRKGVLIGDRVVIRKAGDVIPEVLGPVADARTGDEREFVMPTRCPE
CFTPLAHQKEGDVDIRCPNARSCPAQLRERLFHLAGRGAFDIEVLGYEAATALLESGVVV
DEGDIFDLDTEKLERVELFRTKAGDLSANARKLLANLDTAKDRPLWKVLVGLSIRHVGPT
AAQALAREFGSLEAIEAASEEELADVDGVGPTIAAAVEEWFGVDWHREVVDKWRRAGVRM
AEERDESIPRNLEGLSIVVTGSLSTYSRDEAKEAIMSRGGKAAGSVSKKTAFVVVGDAPG
SKYDKAVQLKVPVLDEGGFQVLLDRGPDAAAEVALPAGEEEPADE
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaagctcaggacgtgacggacgtgcccgccgaggtacgggagcggtacggcgcg
ctggcggacgaggtccgcggccaccagttccgctactacgtgctggactcgccgacgatc
tccgacggtcagttcgacgagctgctgcaccggctcgaggccatggaggcggagtacccg
tccctggtaacgccggagtcgccgacgcagaacgtgggcggcacgttctccaccgagttc
gccgcgtacgaccatctcgagcgcatgctcagcctggacaacgtcttcgacaccgaggag
atgctcgcctggatcgagcgcgtcgagcgcgaggtcggcgggtccacgcagtacctggcg
gagctgaagatcgacgggctggccatcaacctgctctacgaacagggcaagctcacacgc
gcgctcacccgcggcgacgggcgcacgggtgaggacgtcacgctgaacgtccgcaccctc
gaccaggtgccggacaggctcaccggcaccgacgagttcccggtgcccgcgctggtcgag
gtgcgcggcgaggtgttcttccgcgtcgaggacttcctggagctgaacgcgaagctcgtc
gaggcgggcaagccgccgttcgcgaacccgcgcaacacggcggcgggatcgttgcggcag
aaggatccccgtgtcacccgcagccgtcgcctgcggctgatctgccacggcctcggcaga
cgcgagggcttcgagcccgggcgccagtcggaggcgtacgacgcgctgcgggcgtggggc
ctgccggtgtccacgcacaccaaggtcttcaccaccgcggaggaggtgctcgaccacatc
cggtactggggcgagcaccggcacgacgccgagcacgagatcgacggcatcgtgatcaag
gtcgaccaggtgtcgctgcagcgcaggctcggcaccacgtcgcgggcgccgcgctgggcg
atcgcgtacaagtacgcgccggaggaggcgatcacgaagctgctcgacatccaggtgaac
gtcgggcgcaccggccgggtcacgccgttcgcggtgatggagccggtgaaagtggccggg
tcgacggtcgccatggccaccctgcacaacgccgaggaggtcaagcgcaagggcgtgctg
atcggcgacagggtggtcatccgcaaggccggtgacgtgatccccgaggtgctcggcccg
gtcgccgacgcccgcacgggtgacgagcgcgagttcgtgatgcccacccggtgcccggag
tgcttcacgccgctggcgcaccagaaggagggcgacgtcgacatccgctgcccgaacgcg
cgctcgtgtcccgcgcagctgcgggagcggctgttccacctggccgggcgcggcgcgttc
gacatcgaggtgctgggctacgaggcggccaccgcgctgctggagtccggggtggtggtc
gacgagggcgacatcttcgacctggacaccgagaagctcgagcgggtggagctgttccgc
accaaggccggtgacctgtcggccaacgcgcgcaagctgctggcgaacctggacacggcg
aaggaccgtccgctctggaaggtgctggtgggcctgtccatcaggcatgtcggcccgacg
gcggcgcaggcgctcgcgcgcgagttcggctcgctggaggcgatcgaggccgcgagcgag
gaggaactggccgatgtggacggtgtcggcccgaccatcgcggcggcggtggaggagtgg
ttcggcgtcgactggcaccgcgaggtcgtggacaagtggcgccgtgcgggggtccggatg
gcggaggagcgggacgagtcgatcccgcgcaacctcgagggcctctcgatcgtcgtgacg
ggctcgctgtcgacgtactcgcgggacgaggccaaggaagccatcatgtcgcgcggtggc
aaggcggcgggttcggtgtcgaagaagacggcgttcgtcgtggtgggggacgcaccgggc
tcgaagtacgacaaggcggtgcagctgaaggtcccggtgctcgacgagggcggcttccag
gtgctgctggaccggggccccgacgccgcggcggaggtggccctgcccgccggcgaggag
gagcccgccgatgagtga
DBGET
integrated database retrieval system
