Acidipropionibacterium acidipropionici CGMCC 1.2230: ASQ49_10455
Help
Entry
ASQ49_10455 CDS
T04523
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aaci
Acidipropionibacterium acidipropionici CGMCC 1.2230
Pathway
aaci03030
DNA replication
aaci03410
Base excision repair
aaci03420
Nucleotide excision repair
aaci03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aaci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ASQ49_10455
03410 Base excision repair
ASQ49_10455
03420 Nucleotide excision repair
ASQ49_10455
03430 Mismatch repair
ASQ49_10455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aaci03032
]
ASQ49_10455
03400 DNA repair and recombination proteins [BR:
aaci03400
]
ASQ49_10455
Enzymes [BR:
aaci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ASQ49_10455
DNA replication proteins [BR:
aaci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ASQ49_10455
DNA repair and recombination proteins [BR:
aaci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ASQ49_10455
NER (nucleotide excision repair)
GGR (global genome repair) factors
ASQ49_10455
MMR (mismatch excision repair)
DNA ligase
ASQ49_10455
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ASQ49_10455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ALN15618
LinkDB
All DBs
Position
2343154..2345358
Genome browser
AA seq
734 aa
AA seq
DB search
MANEQTAMSPEESEPQRRWSDLVDRIEAAQQAYYGEDQPTISDAEYDRLMIELQQLEDAN
PSLRTPESPTQRVGAPQRITDFAPVEHIERLLSLDDVFSVEELEAWIARAGAEVGTVRYL
CELKIDGLAIDLVYRRGRLVSGATRGDGRVGEDVTGNVRTISAIPQRLTGDDVPELLEVR
GEVFFPVADFEDLNAHLVEVGKPPFANPRNAAAGSLRQKDPRITADRPLSMICHGLGRVE
GYDFPSQGRAYDKLAEWGLPVSPYYKLVDSRPEVLAFIEHWGDHRDEASHQIDGVVVKID
DISVQRRLGATSRAPRWAVAYKYPPEEVNTRLLDIQVNVGRTGRVTPFGVMEPVTVAGST
VEMATLHNAFEVKRKGVLIGDTVVLRKAGDVIPEILGPVVGLRDGTEREFVMPRVCPSCG
TTLAYEKDGDKDLRCPNSRSCPSQQRERVFSLASRGALDIEALGWEAAIALTDPEYSRPD
PGDVAGEMPEPQTPVLSSEAGLFDLTADDVKDVAVWRRRKVKGEPGPWQRELYFWTRPTA
KKPSVPSATTKKMFDELGKARSQPLWRVLVALSIRHVGPTAARALAGRFGSVQAIRDASV
EDLAETDGVGRVIAESVLDWFTVDWHREIVERWAAAGVRMADDVADGPAAVLEGLTIVVT
GSLEGFSRDEAKEAILSRGGKAAGSVSKKTDYVVVGANAGSKETKARDLGRPILDEAGFR
HLLDNGPQGVPTVG
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgagcagaccgcgatgagccccgaggagtccgagccgcagcgacgctggagc
gatctggtcgaccgcatcgaggccgcccagcaggcctactacggcgaggaccagccgacg
atctccgacgccgagtatgaccggctcatgatcgagctgcagcagctggaggacgccaac
ccctccctgcgcacccccgagtcgcccacccagcgggtcggcgccccgcagcggatcacc
gacttcgcccccgtcgagcacatcgaacggctgctcagcctcgacgacgtcttcagcgtc
gaggagctggaggcctggatcgcccgggccggcgcggaggtcggcacggtccggtacctg
tgcgaactcaagatcgacggcctggccatcgatctggtctaccgccgcggacggctggtg
agcggggccacccgcggcgacggccgggtgggggaggacgtcaccggcaatgtgcgcacc
atctctgcgatcccgcagcggctgaccggcgacgacgtgcccgagctgctcgaggtgcgc
ggcgaggtgttcttccccgtcgccgatttcgaggacctcaacgcccacctggtggaggtc
ggcaagcctcccttcgccaatccgcgcaacgcggccgccggctcgctgcgccagaaggat
ccgcggatcaccgccgatcgtccgctgtcgatgatctgccacggtctgggacgggtggag
ggctacgacttccccagccagggcagggcctacgacaagctcgccgagtggggactgccc
gtctccccctattacaagctggtcgacagccggcccgaggtgctcgccttcatcgagcac
tggggggaccatcgcgacgaggcctcccaccagatcgacggggtggtcgtcaagatcgac
gacatctccgtccagcgcaggctcggcgccacctcccgggcgccccgctgggcggtggcc
tacaagtacccgcccgaggaggtcaacacgaggctcctcgacatccaggtcaacgtcgga
cgcaccggccgggtgacccccttcggggtgatggaacccgtgacggtggccggttccacg
gtggagatggccaccctgcacaacgccttcgaggtgaagcgcaagggggtgctgatcggc
gacaccgtcgtgctgcgcaaggccggagacgtcatccccgagatcctcggcccggtggtg
gggctgcgcgacggcaccgagcgggagttcgtgatgccccgggtctgcccctcctgcggt
acgacactggcctacgagaaggacggcgacaaggacctgcgctgccccaactcccgatcc
tgcccctcccagcagcgggagcgggtgttctccctggcgagtcggggagccctggacatc
gaggctctcggttgggaggcggccatcgccctcaccgatcccgagtactcccgccccgac
cccggcgacgtcgccggcgagatgcccgagccgcagacaccggtgctgtccagcgaggcc
ggactgttcgacctgaccgccgacgacgtcaaggacgtggcggtgtggcggcgtcgcaag
gtcaagggggagcccgggccctggcagcgcgagctgtacttctggactaggcccaccgcc
aagaagccgtcggtgcccagtgccaccaccaagaagatgttcgacgagctgggcaaggcg
cgcagccagccgctgtggcgggtgctcgtggcactgtcgatccgtcacgtcggccctacc
gcggcccgcgccctggccggccggttcggctcggttcaggcgatccgcgacgcctcggtc
gaggatctcgccgagaccgacggggtcggccgggtgatcgccgagtcggtgctcgactgg
ttcaccgtcgactggcaccgcgagatcgtcgagcgctgggccgccgccggggtgaggatg
gccgacgacgtcgccgacggcccggccgccgtcctggaggggctgacgatcgtggtcacc
ggatccctggagggattcagccgcgacgaggccaaggaggccatcctgtcgcgcggtggc
aaggctgcaggatcggtgtcgaagaagaccgactacgtcgtggtgggcgccaacgccggg
tcgaaggagacgaaggcccgggatctgggccgcccgatcctcgacgaggccggattccgc
cacctcctggacaacggaccccagggggtgccgacggtcgggtga
DBGET
integrated database retrieval system
