Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1: TC41_0652
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Entry
TC41_0652 CDS
T01821
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aad
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1
Pathway
aad03030
DNA replication
aad03410
Base excision repair
aad03420
Nucleotide excision repair
aad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TC41_0652 (ligA)
03410 Base excision repair
TC41_0652 (ligA)
03420 Nucleotide excision repair
TC41_0652 (ligA)
03430 Mismatch repair
TC41_0652 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aad03032
]
TC41_0652 (ligA)
03400 DNA repair and recombination proteins [BR:
aad03400
]
TC41_0652 (ligA)
Enzymes [BR:
aad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TC41_0652 (ligA)
DNA replication proteins [BR:
aad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TC41_0652 (ligA)
DNA repair and recombination proteins [BR:
aad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TC41_0652 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TC41_0652 (ligA)
MMR (mismatch excision repair)
DNA ligase
TC41_0652 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TC41_0652 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
HHH_8
HHH_3
YCII
Zn_ribbon_RRN7
Auto_anti-p27
Zn_ribbon_NUD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AEJ42611
UniProt:
F8IDV7
LinkDB
All DBs
Position
658455..660509
Genome browser
AA seq
684 aa
AA seq
DB search
MRVVDAKSALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKY
PELVDPASPTQRVGAPALEGFAKVVHEVPMLSLANAYSTEDLLDWDRRVRQAVGDDVRYV
CELKIDGLAVALRYQEGRLVLGATRGDGEVGEDITANIRTIRNVPLELSEPVSLEVRGEA
YMPKREFMRLNELREQQGEPLFANPRNAAAGSLRQLDPAVAASRRLGVIVYQLVRAEAHG
CETHSQALDYVARLGLPAHRERHVCANIEDVIAYIEAWADKRHELPYATDGMVVKVDSLA
LQARLGATAKSPRWAIAYKYAAEQAETTLRAIELNVGRTGVVTPTAVFDPVQLAGTTVSR
ASLHNEDLVREKDIRVGDVIVVQKAGDIIPEVIRSLPERRTEPLPEFRMPETCPQCGSRL
VRLDGEVAWRCINPDCPALLREGLIHFCSRDAMNIEGLGEQWITVLLERGLVRTHADLYR
LRKSDLIQLDRMGDKLADKLLHNIQESKRNSLERLLFGLGIRHVGEKAAKTLAEHFGTMD
TLMSATEEELMAVPDIGPKVAQSIRQYFDTPRVRQLIGELKDLGVNMVYLGPQKVSDGPL
AGKTVVLTGVLHAADRKQATEWIERMGGKVASSVSAKTDVLIAGEKAGSKLAKAQEILRT
HPDAKLEIWDEAAFLRLVDEAGLR
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgtcgtggacgccaaatcggccttgtccttggaagaagcgcgtgcgcgcgccaag
gtgctccgggaacagattgaataccacaaccgaaaatactacctggaggacaacccggag
atctccgacgcggagtgggacgcgctgatgcgcgatctcatcgagcttgagcgcaaatac
ccggagctcgtcgatccggcctcgcctacgcagcgggtgggtgccccggccctcgaggga
ttcgccaaggtcgtgcacgaggtgcccatgctgtcgctcgcaaacgcgtattcgacggag
gatctgctcgattgggatcgccgcgtgcgacaggcggtgggcgacgacgtccgctacgtg
tgcgagctcaagattgacggcctggccgtggcactgcgctaccaggagggccggctcgtg
cttggggcaacgcgcggcgacggcgaggtgggagaggacatcacggccaacattcgcacc
attcgcaatgtgccgctggaactttcggaacctgtgtcgctcgaggtgcgaggcgaggcg
tacatgccaaagcgcgagttcatgcggctcaacgaactccgcgagcagcagggcgagccg
cttttcgccaacccgcgcaacgcggccgccggatcgctccgccagctcgatccggccgtg
gccgcgagccggaggctcggcgtgattgtgtaccagttggtgcgcgccgaggcgcacggg
tgtgagacgcacagccaggcgctggattacgtggcccgcctcggcctgcccgcgcaccgc
gagcggcacgtgtgcgcgaacatcgaggacgtgatcgcgtacatcgaggcgtgggcggac
aagcgccacgagctgccgtacgcgacggacggcatggtggtgaaggtggattctctcgca
ctgcaggcgcgcctcggcgccaccgccaagagcccgcgctgggccattgcgtacaaatac
gcggcggagcaggcggagaccacgcttcgcgccatcgagttaaacgtcggccgcacgggc
gtggtgacgccgaccgctgtgttcgatcccgtccagctcgcgggcaccacggtctcgagg
gcgtcgctgcacaacgaggacttggtgcgcgagaaggacatccgcgtgggcgacgtcatt
gtggtgcagaaggcaggggacatcattcccgaggtcattcggtcgctgcccgagcggcgc
accgagccgctgcccgaatttcgcatgccggagacgtgtccgcagtgcggatccaggctc
gtgcggctcgacggcgaggtggcgtggcgctgcatcaaccccgactgcccggctctcctg
cgcgaggggctcatccacttctgttcgcgcgacgcgatgaacatcgagggcctcggtgag
cagtggatcacggtgcttttggagcgcgggctggtacggacgcacgcagatttgtatcgc
cttcgaaagtcggatctcattcagctcgatcggatgggcgacaagctcgccgataagctg
ttgcacaatatccaggagagcaagcgaaactcgctcgagcgcctcttgtttggactcggc
atccggcacgtgggcgagaaagcggccaagacgttggcggagcacttcgggaccatggat
acgctcatgtccgcaactgaggaggagttgatggcggtccccgacatcggccccaaagtc
gcgcagagcatccgccagtacttcgatacgccccgcgtgcgccagttgattggggaattg
aaagatctgggtgtgaacatggtctatctcggcccgcagaaggtgtcggacggcccgctc
gccggaaagaccgtggtattgaccggcgtgcttcacgcggcggatcgaaaacaggcgacg
gagtggattgagcggatggggggcaaggtcgcctcgagtgtcagcgcaaagacagacgtg
ctcatcgcgggggagaaagccggatcgaagctcgccaaagcccaggagatcttgcggact
catccggacgcaaagctcgaaatctgggacgaggcggcgtttctgcgcctcgtggacgag
gcgggacttcgctga
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