Achromobacter aegrifaciens: RA224_25490
Help
Entry
RA224_25490 CDS
T09343
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aaeg
Achromobacter aegrifaciens
Pathway
aaeg03030
DNA replication
aaeg03410
Base excision repair
aaeg03420
Nucleotide excision repair
aaeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aaeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RA224_25490 (ligA)
03410 Base excision repair
RA224_25490 (ligA)
03420 Nucleotide excision repair
RA224_25490 (ligA)
03430 Mismatch repair
RA224_25490 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aaeg03032
]
RA224_25490 (ligA)
03400 DNA repair and recombination proteins [BR:
aaeg03400
]
RA224_25490 (ligA)
Enzymes [BR:
aaeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RA224_25490 (ligA)
DNA replication proteins [BR:
aaeg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RA224_25490 (ligA)
DNA repair and recombination proteins [BR:
aaeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RA224_25490 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RA224_25490 (ligA)
MMR (mismatch excision repair)
DNA ligase
RA224_25490 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RA224_25490 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WLW60552
LinkDB
All DBs
Position
complement(5460414..5462522)
Genome browser
AA seq
702 aa
AA seq
DB search
MSGASGGENAAQAAARLRAEIEQHNVRYYVYDDPSISDAEYDRLMRELQALEAEHPELVT
PESPTQRVGAAPVSAFGSVRHVVPMLSLGNAFDEEDVTAFDRRVTDTLRGAGLLGPAQQA
DYFCELKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGAYPKVLE
VRGEVLMNRADFEKLNQAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGE
VQGLAGSQGGLFAEASAGVAEASQLPEKSHGAMLDWLASLGLPVNVKHNHRASGAEGLMA
FYAKVGALRPDLPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIE
VQVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVL
GPVLEKRPDDAREFVMPTACPVCGSAIERLEDETIARCTGGLFCGAQRKQTLWHAASRKA
LDIEGLGEKLVDQLVDSGRVKTLADLYSLRPLELVGLDRMGQKSADNLVAAIDKARAPGL
NRLLYALGIRHVGETTARDVARHFGSIDAIMDADEDALSSVPDVGPVVAASIRRFFAEQH
NRDVIEQLKSQGVNPVAEAAPQATTLAGKTFVLTGTLPNWTREEASMRIQAAGGKVSGSV
SKKTAYLVAGEDSGSKLAKAQELGVAVLDEDGLKALLGEQGG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgcgtctggcggtgaaaacgcggcgcaggccgcggcgcgcttgcgcgccgaa
atcgaacagcacaacgtccgctactacgtctacgacgatccgtcgatatcggatgccgag
tacgaccggctgatgcgcgaactgcaggccctggaggccgagcatccggagctggtgacg
ccggagtcgccgacgcagcgcgtgggtgcggcgcctgtttcggcatttggcagcgtgcgt
cacgtggtgccgatgctgtcgctgggcaacgccttcgacgaagaagacgtgacggccttc
gaccgccgcgtcaccgacacgctgcgcggcgcgggcctgctggggccggcgcagcaagcc
gattacttctgcgagctcaagctggacgggctggcaatcagcctgcgctacgaagacggc
cgcctggtgcaggccgccacccgcggcgacggccagacgggtgaagacgtcacctccaat
atccgcaccatcaaggcgattccgctgcagctcaagggggcgtaccccaaggtgctggaa
gtccgcggcgaagtcctgatgaatcgcgccgactttgaaaagctgaaccaggcccaggcc
aagcgcgacgagaaagtcttcgtcaatccgcgcaatgccgccgcgggcagcctgcgccag
ctggatccgcgcatcaccgccaagcggccgctgcgcttcttcgcctatggctggggcgaa
gtccagggcctggcgggttcgcagggcggcttgttcgccgaagcgtcggccggcgtggcc
gaggcctcgcaattgcccgagaaatcccacggcgccatgctggactggctggcctcgctg
ggcctgccggtcaacgtcaagcacaaccaccgcgccagcggcgccgagggcctgatggct
ttctacgccaaggtcggcgcgctgcggcccgacttgccctacgacatcgacggcgtggtc
tacaaggtggattcgctgcccgcgcagaaggtgctgggtttcgtcgcgcgcgcgccgcgc
ttcgcgctggcgcacaagttcgccgccgaggaagccaccaccaccttgctcgacatcgag
gtgcaggtgggccgcaccggcgccatcacgccggtggcgcgcctgaagccggtgttcgtc
ggcggcgtgaccgtcaccaacgccacgctgcataacgaagacgagatccgccgcaaggac
gtacgcatcggcgacacggtcatcgtgcgccgcgcgggcgacgtgattccggaagtactc
ggcccggtgctggaaaagcgcccggacgacgcccgcgaattcgtcatgcccacggcctgt
ccggtttgcggctccgccatcgaacgcctggaagacgagaccatcgcgcgttgcaccggc
ggtttgttctgcggcgcgcagcgcaagcagacgctgtggcacgccgccagccgcaaggcg
ctggacatcgaaggcctgggcgaaaaactggtggatcagttggtcgacagcggccgggtc
aagaccctggccgacctgtacagcctgcgtccgctggaattggtgggcctggaccgcatg
ggccagaagtccgccgacaacctggtggccgccatcgacaaggcgcgcgcgcccggcttg
aaccgcctgctgtacgcgctgggcatccgccacgtgggcgagaccacggcgcgcgacgtg
gcgcgccatttcggcagcatcgacgccatcatggacgccgatgaagacgccttgtcctcc
gtacccgacgtgggcccggtggtggcggcttcgatccgccgtttcttcgccgagcagcac
aaccgcgacgtgatcgaacaactgaagtcgcagggcgtgaatcccgtggccgaggcggcg
ccgcaagccacgacgctggccggcaagaccttcgtgttgaccggcacgctgcccaattgg
acgcgcgaagaagcctcgatgcgtatccaggcggcgggcggcaaggtcagcggctcggtg
tccaagaaaacggcctatctggtggccggcgaggattccggcagcaagctcgccaaggcc
caggaactgggcgtggcggtgctggacgaggacggcctgaaggccttgctgggcgagcag
ggcggctga
DBGET
integrated database retrieval system
