Aureococcus anophagefferens: AURANDRAFT_5390
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Entry
AURANDRAFT_5390 CDS
T04134
Name
(RefSeq) hypothetical protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
aaf
Aureococcus anophagefferens
Pathway
aaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AURANDRAFT_5390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaf03019
]
AURANDRAFT_5390
Messenger RNA biogenesis [BR:
aaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AURANDRAFT_5390
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_25
AAA_28
AAA_29
Zeta_toxin
NACHT
SbcC_Walker_B
CBM_10
RsgA_GTPase
AAA_16
AAA_22
AAA_23
AAA_13
Motif
Other DBs
NCBI-GeneID:
20222341
NCBI-ProteinID:
XP_009040804
JGI:
Auran1_5390
UniProt:
F0YK90
LinkDB
All DBs
Position
Unknown
AA seq
215 aa
AA seq
DB search
LRQVGFRLPAACRCVVAGGNGAGKSTLLRLLAGRHTPESGSATFGGDAAGSTALNGRVAY
VAAEGAWGVENANLEVGTLLDGAAARAGGGPRLDALAAALRVDDRLRSRGTRELSDGERR
KVQLFVALAPEGLELVLLDEACVDLDALVRDDLMAYLEAQRYAVLYATHVFDGLDDWPTH
VLDVRKGAVAATLPWAAPGEGGRLFELCRGWLLED
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
ctgcgccaggtcgggttccgcctgccggcggcctgccgctgcgtcgtcgccggcggcaac
ggcgcgggcaagtcgacgctgctgaggctgctcgccgggcgccacacgccggagagcggg
tcggcgaccttcggcggggacgccgccgggtcgacggcgctcaacggccgcgtcgcgtac
gtcgccgcggaaggtgcctggggcgtcgagaacgcgaatttagaagtcggcacgctcctc
gacggcgcggcggcgcgcgcgggcggcgggccgcgcctcgacgccctggccgcggcttta
cgggtggacgaccggctccggagccggggcacgcgggagctgagcgacggcgagcggcgg
aaggtccagctcttcgtcgctctggcgcccgagggcctcgagctcgtgctcctcgacgag
gcctgcgtggatttggacgccctcgtgcgcgacgatttgatggcctacctcgaagcgcag
cgctacgcggtgctctacgcgacgcacgtcttcgacggcctggacgactggccgacgcac
gtcctcgacgtgcgcaagggcgccgtcgccgcgacgctgccctgggcggcgccgggcgag
ggcggccgcctcttcgagctctgccggggctggctcctcgaggac
DBGET
integrated database retrieval system
