Arthrobacter agilis: NCTC2676_1_00857
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Entry
NCTC2676_1_00857 CDS
T07056
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aagi
Arthrobacter agilis
Pathway
aagi03030
DNA replication
aagi03410
Base excision repair
aagi03420
Nucleotide excision repair
aagi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aagi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC2676_1_00857 (ligA)
03410 Base excision repair
NCTC2676_1_00857 (ligA)
03420 Nucleotide excision repair
NCTC2676_1_00857 (ligA)
03430 Mismatch repair
NCTC2676_1_00857 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aagi03032
]
NCTC2676_1_00857 (ligA)
03400 DNA repair and recombination proteins [BR:
aagi03400
]
NCTC2676_1_00857 (ligA)
Enzymes [BR:
aagi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC2676_1_00857 (ligA)
DNA replication proteins [BR:
aagi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC2676_1_00857 (ligA)
DNA repair and recombination proteins [BR:
aagi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC2676_1_00857 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC2676_1_00857 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC2676_1_00857 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC2676_1_00857 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
RNA_ligase
DNA_meth_N
DUF5872
Zn_ribbon_TFIIB
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
VDR31586
LinkDB
All DBs
Position
1:936581..938866
Genome browser
AA seq
761 aa
AA seq
DB search
MTPEPDSAPGETPTAEQPAPPSDQLREEYAQLAEAIRAHRIAYYQDAAPTVSDAEFDALF
RRLEELEALHPELVSNDSPTQEVGGEVSSAFTPVDHLARMYSLEDVFSLDELKVWLDRAA
AGVEQRNPGAAIEWLTELKIDGLAVNLLYRNGELVRAATRGDGVTGEDITHNVLTISSVP
KHLAGSDHPEEVEIRGEVFFPTKEFGQLNERMVAAGKAPFANPRNAAAGSLRQKDPAMTA
ERPLDMYVHGIGARTGLSAETQSGTYELLKEWGLPTSPYYRVLKDQDEVVAFIEHYGDHR
HDLLHEIDGIVVKVDSFALQRALGHTSRVPRWSVAYKYPPEEVNTRLLDILVNVGRTGRV
TPFGLMEPVKVAGSTVGMATLHNQEVVKAKGVMIGDIVVLRKAGDVIPEIVGPVMALRDP
VSVRAFVMPTECPSCGTPLQPAKEGDVDIRCPNARSCPSQLRERVFHLAGRGAFDIEALG
WEAAIALTQPAEPELPPITTEADIFDLTPEKLADVRIERDKKVKGVVTDRELVPYFYSKG
TAKKASEPSATTRKLFTELEKAKNQPLWRVLVALSIRHVGPTASRALATAFGSMDRIRAA
SEEELANVDGVGPTIAAALTEWFAEEWHREIVERWAAAGVRMEDEIDANTPRTLEGLTVV
VTGSLERYNRDEAKEAIITRGGKAAGSVSKNTSYVVAGENAGTKLEKAETLGVTVLDEDG
FVQLLELGPAGVTGADTGTSTDTGTGTGTGTAPDTATTVTT
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
gtgaccccagaacctgacagcgcgccgggagagacccccaccgcagagcagcccgcacct
cccagcgaccagctccgcgaggagtacgcgcagctcgccgaggcgatccgtgcgcaccgc
atcgcctattaccaggacgcggcccccacggtctccgacgccgagttcgacgccctgttc
cggcgactggaggaactcgaggctctccacccggagctcgtgtccaacgactcgccgacc
caggaggtgggcggcgaggtctcctccgcgttcacgcccgtggaccacctcgcccgcatg
tacagtctcgaggacgtcttctccctcgacgagctgaaggtctggctggaccgcgccgcg
gccggcgtggagcagcgcaaccccggtgcggccatcgagtggctcaccgaactgaagatc
gacggcctcgcggtcaacctcctctaccgcaacggcgagctcgtccgcgccgcgacccgc
ggcgacggcgtcaccggcgaggacatcacgcacaacgtcctcaccatctcatcggtcccg
aagcaccttgccggtagcgaccaccccgaggaggtggagatccgcggcgaggtgttcttc
ccgacgaaggagttcggccagctcaacgagcgcatggtggcagcgggcaaggctcccttc
gccaatccgcgcaacgcagcggccggttcgctccggcagaaggatccggccatgacggcc
gaacgtccactggacatgtacgtgcacggcatcggtgccagaacgggtctgtccgccgag
acccagtccgggacctacgagctcctgaaggaatgggggctgccgacgtcgccgtactac
agggtgctgaaggaccaggacgaggtcgtcgcgttcatcgagcactacggcgaccatcgc
cacgacctcctgcacgagatcgacggcatcgtggtgaaggtggacagtttcgcgctccag
cgcgccctcggccacacctcccgggtaccccgctggtcggtggcgtacaagtacccgccg
gaggaggtgaacaccaggctgctggacatcctcgtcaacgtcggccgcaccggtcgcgtg
acaccgttcggcctcatggagcccgtcaaggtcgcggggtccaccgtcggcatggccacc
ctgcacaaccaggaggtcgtgaaggccaagggcgtcatgatcggtgacatcgtggtgctg
cggaaggccggcgacgtcattccggagatcgtgggcccggtgatggccctgcgggatccc
gtctctgtgcgggcgttcgtcatgcccacggagtgcccgtcctgcggaacccccctccag
ccggccaaggagggcgacgtcgacatccgctgccccaacgcccgctcctgcccgtcgcag
ctgcgtgagcgcgtcttccacctcgcgggtcgcggggccttcgacatcgaggccctcggc
tgggaggcagccatcgcgctgacgcagcccgccgagcccgagctgccgccgatcaccacc
gaagccgacatcttcgacctcacgcccgagaagctcgccgacgtgcggatcgagcgtgac
aagaaggtcaagggcgtggtgacggaccgcgaactcgtcccgtacttctactcgaagggc
acggcgaagaaagcgtccgagccgagcgccaccacccgcaagctcttcaccgagctcgag
aaggccaagaaccaaccgctctggcgcgtcctcgtcgcgctgtccatccggcatgtcggc
ccgacggcgtcccgcgccctcgccacggccttcgggtccatggaccggatccgtgccgcg
agcgaggaggaactcgcgaacgtcgacggcgtgggccccacgatcgcagcagccctcacc
gagtggttcgccgaggagtggcaccgcgagatcgtggagcggtgggccgcggcgggtgtg
cgcatggaggacgagatcgacgcgaacacgccccggacgctcgagggcctcaccgtcgtc
gtcaccggatcgctcgagcggtacaaccgcgacgaagccaaggaagccatcatcacgcga
ggcggcaaggctgccggctcggtctccaagaacaccagttatgtggtggccggcgagaac
gcgggcaccaagctggagaaggcggagacgctcggcgtgacagtgctggacgaggacggc
ttcgtccagctgcttgagctgggcccggccggcgtcacaggcgcagataccggtacaagc
acagatacaggcacaggtaccggcacaggcacagccccagataccgcgaccacggtgacg
acgtga
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