Alteromonas australica H 17: EP13_09355
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Entry
EP13_09355 CDS
T03220
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aal
Alteromonas australica H 17
Pathway
aal03030
DNA replication
aal03410
Base excision repair
aal03420
Nucleotide excision repair
aal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EP13_09355 (ligA)
03410 Base excision repair
EP13_09355 (ligA)
03420 Nucleotide excision repair
EP13_09355 (ligA)
03430 Mismatch repair
EP13_09355 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aal03032
]
EP13_09355 (ligA)
03400 DNA repair and recombination proteins [BR:
aal03400
]
EP13_09355 (ligA)
Enzymes [BR:
aal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EP13_09355 (ligA)
DNA replication proteins [BR:
aal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EP13_09355 (ligA)
DNA repair and recombination proteins [BR:
aal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EP13_09355 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EP13_09355 (ligA)
MMR (mismatch excision repair)
DNA ligase
EP13_09355 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EP13_09355 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
AIF98867
UniProt:
A0A075P6E3
LinkDB
All DBs
Position
2067769..2069802
Genome browser
AA seq
677 aa
AA seq
DB search
MSETDLQVKQRIDELRARLAEYNYQYYVKDAPTVPDAEYDREMQELMALEQAHPEFQSVN
SPSQKVGGQALTAFEQVTHDVPMLSLDNAFDEASLLAFEKRILDRLKQSVTLAFSCEPKL
DGLAVSILYEDGQLVRAATRGDGQVGENITANVRTIANVPLSLRGKNWPQRVEVRGEVFM
PKNGFKTLNENQRKSGGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYSLGVVTPSEFE
LPEQHSERLNTLASWGVPLCPDITTAQGGKGCLAYYQHILEKRDALPYDIDGVVFKVDDI
QLQNTLGFVARAPRWAIAQKFPAQEEVTQLIDVEFQVGRTGAITPVARLEPVFVGGVTVS
NATLHNQDEIERLGVKVGDYVVIRRAGDVIPQVVSVVEAKRQSNVKPIEFPTQCPVCDSN
VEKLEDEAVARCTGGLICAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDANLVHSPADF
FTLSLPKLIGLERMAEKSASKLLDSLEASKRTTLAKFLYALGIREVGEATASNLALHFRT
LESIRQASIDDLIAVQDVGEIVAAHIVNFFNESHNTDVIDALLSVGINWPEIEAKEEGVT
LPLEGKTCVITGTLSTMGRSDAKSALQALGAKVAGSVSKNTDFLVAGEKAGSKLTKAQDL
GVDVWDEEALVAFLERH
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaccgatctacaagtgaagcaacgcatagacgaacttcgtgctcgactcgct
gaatataattatcaatattacgttaaagatgcgcccaccgtaccggacgcagagtacgac
cgggaaatgcaggagttgatggcgttagagcaagcgcaccctgagtttcaaagcgttaat
tcacccagccaaaaagtgggcggtcaagcgctaaccgcgtttgagcaagtgactcacgat
gtgccaatgctgtcgctagataacgcgtttgatgaagcgtcattgttggcctttgaaaag
cgaattctagaccgacttaaacaatcagtcacgctggcttttagctgtgaacctaagtta
gatggtttagcggtgagtattctttacgaagacggtcagttagtgcgtgcagctacccgc
ggtgacgggcaagtaggtgagaatattaccgctaatgtacgcaccatcgccaatgtcccg
ttatcgttaaggggtaaaaattggccacagcgcgttgaagtacgcggtgaagtgtttatg
cctaaaaacggttttaaaacactgaatgaaaatcagcgaaaaagcggaggaaaggtattt
gcaaaccctcgtaatgcggcagcgggcagtttgcgccagttagattccaaaataacggca
aaacgacctcttatgttctatgcctattccttaggagttgtaaccccaagtgaattcgaa
ttgcccgaacagcatagtgaacgcttaaatacccttgcttcttggggcgtgccgctgtgc
ccagatattaccacagctcaagggggaaagggctgcttagcctattaccaacacatttta
gagaaacgtgatgcccttccttacgatatcgatggcgttgtattcaaagtggatgatatt
cagctgcaaaacacccttggtttcgttgctagagcgcctcgctgggctattgcacaaaag
tttccagcgcaagaagaggttactcagttaattgatgtagaatttcaggtagggcggaca
ggggctattacgcccgttgcgcggttagagccggtatttgtcggtggcgtaaccgtatct
aatgccacgcttcataaccaagatgaaattgagcgtctaggtgtgaaagttggcgactac
gtggttattaggcgagctggggatgttataccgcaagtcgtttctgtggttgaagctaaa
cgccagagtaacgtgaagcccatcgagtttcctacgcagtgcccggtgtgtgattcaaat
gttgaaaaacttgaagatgaagcggtagcgcgttgtacaggggggcttatttgtgcggca
caacgtaaacaagcactcaaacacttcgcttctagaaaagcgtttgatattgacggcttg
ggcgacaaacttgtcgatcaattagtggatgcgaatttagtacacagcccggcagacttc
tttacgctttcgcttccaaagctaataggtttagagcgcatggctgaaaaatcggcgtct
aaacttcttgattcactggaagcgtctaaacgtaccacattggctaagtttctttacgcg
ctaggtattcgtgaagttggtgaagccacagcgtccaatttagccttgcactttcgtacg
ttagaaagcattaggcaggcaagcattgatgaccttatcgcggttcaagatgtgggagaa
atcgtcgctgcgcatatagtcaatttctttaacgaaagtcacaataccgatgttattgat
gctttgttgtctgttggcattaactggccagaaatagaggcgaaagaggaaggtgtaact
ttaccattggagggtaaaacctgcgtgattacgggcacactaagcacgatggggcgttcc
gacgcaaaatcagcattacaagcattaggtgccaaagttgcgggatctgtatcaaaaaat
acggatttcttagttgcaggcgaaaaagcgggttctaaactgactaaagcacaggactta
ggtgtggacgtttgggatgaagaagcattggttgcgtttctagagcgccactga
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integrated database retrieval system
