Arenibacter algicola: AREALGSMS7_04665
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Entry
AREALGSMS7_04665 CDS
T04973
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aalg
Arenibacter algicola
Pathway
aalg03030
DNA replication
aalg03410
Base excision repair
aalg03420
Nucleotide excision repair
aalg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aalg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AREALGSMS7_04665 (ligA)
03410 Base excision repair
AREALGSMS7_04665 (ligA)
03420 Nucleotide excision repair
AREALGSMS7_04665 (ligA)
03430 Mismatch repair
AREALGSMS7_04665 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aalg03032
]
AREALGSMS7_04665 (ligA)
03400 DNA repair and recombination proteins [BR:
aalg03400
]
AREALGSMS7_04665 (ligA)
Enzymes [BR:
aalg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AREALGSMS7_04665 (ligA)
DNA replication proteins [BR:
aalg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AREALGSMS7_04665 (ligA)
DNA repair and recombination proteins [BR:
aalg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AREALGSMS7_04665 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AREALGSMS7_04665 (ligA)
MMR (mismatch excision repair)
DNA ligase
AREALGSMS7_04665 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AREALGSMS7_04665 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
RNA_lig_T4_1
HNOB
Motif
Other DBs
NCBI-ProteinID:
ASO08059
UniProt:
A0A221V397
LinkDB
All DBs
Position
complement(5480244..5482238)
Genome browser
AA seq
664 aa
AA seq
DB search
MEIKQKIESLRTELREHNYNYYVLDSATISDFEFDMKLKELQALEAKYPEFYDASSPTLR
VGGTITKNFETVVHEHRMYSLDNSYSKEDLEDWEKRIQKILGDAPVEFTCELKYDGASIS
LTYENGQLVKGVTRGDGFQGDDVTSNIKTIRSVPLQLKGDYPPKFDIRGEIVLPFEGFAK
MNQERIENGEDPYMNPRNTASGSLKLQDSALVAERPLDCLLYSIVGVNLKLESQSQMLEK
ARDWGFKVPKAAKLCKTTEEVLEFIDHWDKHRHELPYETDGVVIKVNSIQHQEELGYTSK
SPRWAMAYKFKAEQVSTVLNEITYQVGRTGAITPVANLEPVLLAGTTVKRASLHNADQIE
KLDIREGDTVFVEKGGEIIPKIVGVDFTQRPISSQPTQYIDHCPECNTPLERTEGDAKHY
CPNEYGCPPQITGRIQHYISRKAMDIEGLGGETVELLFKEGLIENYADLYLLTKEQLIPL
ERMAEKSAENLVKGVAESVKIPFERVLFALGIRFVGETVAKKLARAYKNIDSLMVATVEE
LMTVDEIGQRIAESVVSFFRNGINLEIISRLRQYGVQFEVSADKLENQTDLLKGQTFVVS
GVFENLSRDELKKLIEDNGGKVGSSISSKTSYLVAGDKMGPSKRTKAESLGVPIISETDF
LNML
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaaacaaaaaatagaaagccttagaacagagcttagggagcataactataat
tattatgtattggacagtgcaactatttctgactttgagtttgatatgaaactaaaggag
ctacaggctcttgaggcaaaatatccagaattttatgatgccagttccccaaccttaagg
gttggtggaacaattaccaaaaattttgaaacggtggtccacgagcatcgcatgtattcc
ttggacaattcgtactcgaaagaggacctggaagattgggaaaaacgaattcaaaaaata
ttgggcgatgccccggttgaatttacctgtgaactaaaatatgatggggcttccataagt
ttaacctacgaaaatggccagttggtaaagggggtgacccgtggtgatggatttcagggg
gatgatgttaccagtaatataaagaccattagatcggtgccccttcaattaaaaggggat
tatccacctaaatttgatattcgcggggaaatcgttttgccttttgaaggctttgccaaa
atgaaccaagaaaggatagagaatggggaggatccctatatgaatcctagaaacacagct
tctggaagtttaaagttgcaggacagtgccctggtagcagaacgaccattggattgcctg
ttgtacagtattgttggggttaatttgaagttggaatcccagtcccaaatgctggagaaa
gctagggattgggggttcaaggttccaaaagcggccaaattatgtaaaaccacggaggag
gtgctggagtttatagatcactgggacaaacataggcacgaattgccctatgagacggac
ggggtggtcattaaagtgaatagtattcaacatcaggaggaattgggatacacttccaag
tcaccacgctgggccatggcctacaaattcaaggcagagcaggtctctaccgtgttaaat
gaaattacttatcaagttgggcgtaccggggccataacccccgttgccaatttggagccg
gtactcttggcgggtactaccgtaaaaagggcgtccttacacaatgccgaccaaatagaa
aagctcgatattagggaaggtgataccgtctttgttgaaaaaggaggggaaataatcccg
aaaatagtgggggtagattttactcaaagaccgataagttcccagcctacccaatatata
gatcattgtccggagtgcaatacccccttggaacgtaccgagggagatgccaaacattat
tgccccaacgagtacggatgtcctccccagattaccggtcgtatacaacattatatttcg
cgcaaggcgatggatattgaggggctaggaggggaaaccgttgaacttctctttaaggag
ggtcttattgagaattacgcggacctttatttgcttaccaaagagcaattgatacctttg
gaaagaatggctgaaaagtcggccgaaaatctggtgaaaggagttgccgaatcggtaaaa
ataccgtttgaaagggtgctttttgccttgggaatcaggtttgttggggaaaccgtggcc
aaaaaactggcaagggcctataagaatatagattccctcatggtggctactgtagaggaa
ttaatgacggtcgatgaaattggccaacggatcgcagaaagtgtggtatcattttttcgg
aatggaatcaatcttgaaattatttccagattaaggcagtacggggtacaatttgaagtc
tcggccgataaactggagaatcagaccgatcttttaaaggggcagacttttgtggtatcc
ggggtgtttgaaaacctgagtagggatgaacttaaaaaattgatcgaggacaacggcgga
aaggtaggctctagtatatcttcaaaaacttcttatcttgtggctggggacaaaatgggg
cctagcaaaaggaccaaggctgaaagtctgggcgtccccataatttcggagacagatttc
ttgaatatgttataa
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