Abyssibius alkaniclasticus: LGT41_0012105
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Entry
LGT41_0012105 CDS
T08825
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aalk
Abyssibius alkaniclasticus
Pathway
aalk03030
DNA replication
aalk03410
Base excision repair
aalk03420
Nucleotide excision repair
aalk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aalk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGT41_0012105 (ligA)
03410 Base excision repair
LGT41_0012105 (ligA)
03420 Nucleotide excision repair
LGT41_0012105 (ligA)
03430 Mismatch repair
LGT41_0012105 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aalk03032
]
LGT41_0012105 (ligA)
03400 DNA repair and recombination proteins [BR:
aalk03400
]
LGT41_0012105 (ligA)
Enzymes [BR:
aalk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LGT41_0012105 (ligA)
DNA replication proteins [BR:
aalk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LGT41_0012105 (ligA)
DNA repair and recombination proteins [BR:
aalk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LGT41_0012105 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LGT41_0012105 (ligA)
MMR (mismatch excision repair)
DNA ligase
LGT41_0012105 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LGT41_0012105 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Transposase_20
5_3_exonuc
HHH
Motif
Other DBs
NCBI-ProteinID:
UPH70528
LinkDB
All DBs
Position
2430638..2432731
Genome browser
AA seq
697 aa
AA seq
DB search
MAKKSASNALVAARAEWMRLAAQIDAANLAYHQQDAPEIPDADYDALKARLLALEADFPQ
LAGADSPSAKVGAPAASGFGKIRHAVPMLSLGNAFDDADVADFITQIRRFLNHDGPLELT
AEPKIDGLSLSLRYEDGALVHAATRGDGAEGENVTANARTIAEIPQKIGNAPKVLEVRGE
VYLRHDEFATLNERLAAEGQKTLANPRNAAAGSLRQLDASITAARPLRFFAYTWGEVSAP
LGATQTGALARLGEFGFKINPLTRLCPDLETLLATYAEIESQRATLGYDIDGVVYKVNDL
ALQARLGFRTTTPRWAIAHKFPAELATTELLGIDIQVGRTGALSPVARLRPVTVGGVVVS
NATLHNADYIAGRDSFGAEIRDGRDIRIGDWVTVYRAGDVIPKIKDVDLARRPDSAVPYI
FPTTCPECGSEVLREEGEAVARCTGGLICPAQALEKLRHFVSRSAFDIEGLGAKQIEAFF
AEGWVKEPADIFEIEHKYAETLRKRDGWGDKSVAKLVEAINARRSIPLNRLLFALGIRHL
GETAGQVLARHYTSWAAFYAAIQAAAPLEGDDWDELNSIDGVGPVLATALVTYFHNAETR
ASVERLIAHLTVEDVAAPSASSSPVAGKTVVFTGTLARMTRAEAKATAENLGAKVSGSVS
AKTDMLVAGPGAGAKLKTAQSLGVQVLSEDEWLALIA
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaatctgcaagtaatgcgcttgttgcagcacgcgccgaatggatgcgtttg
gcggcacagattgatgcggccaatctggcctatcatcagcaagatgcgcccgaaattccg
gatgccgattatgatgcgctgaaagcacggcttctggcgcttgaagccgatttcccgcag
ctggcaggcgcagactcgccctctgccaaagttggcgcgcccgctgccagcggctttgga
aaaatcagacatgccgtgcccatgctcagccttggcaatgcgtttgacgatgcggatgtg
gccgatttcatcacccagatccggcgtttcctgaaccatgacggccccctggagctaacc
gccgaaccgaaaatcgacgggctgtcgctttcgctgcgctatgaagatggcgcgcttgtt
catgccgccacgcggggcgatggtgccgagggtgaaaacgtaaccgccaatgcgcgcaca
attgccgaaatcccccagaaaatcgggaatgccccaaaggtgctggaagtgcgcggcgag
gtctatctgcgccatgacgaatttgccacgctcaacgaacgcctggccgcagaggggcaa
aaaacccttgccaacccgcgcaatgccgccgctggcagcctgcgccagctcgatgccagc
atcacagccgcgcgccctttgcgctttttcgcctatacctggggcgaggtttcggccccg
ctgggcgccacccaaaccggggcactggcgcggctgggggaattcggtttcaagataaac
ccgctcacccggctttgccccgatctggaaaccctgctcgccacctatgccgagattgaa
tcgcagcgcgccacgcttggctatgacattgacggcgtggtctacaaggtcaacgacctt
gccctgcaagcccggctggggtttcgcaccaccacgccccgctgggccatcgcccataaa
ttccccgccgaactggccacgaccgagcttttgggcattgatattcaggtcggccgcacc
ggcgcgctttcacccgtcgcgcggctgcgccctgtcacggttggcggtgtagtcgtttcc
aacgccacgctgcacaatgccgattatattgccgggcgcgatagtttcggggccgaaatc
cgcgacggccgcgacattcgcatcggcgattgggtaacggtctatcgcgcgggcgatgtg
ataccgaaaatcaaggatgtcgaccttgcccgccgccccgatagtgccgtgccttacata
tttcccaccacttgccccgaatgcggctcggaagttctgcgcgaggaaggcgaggccgtg
gcgcgctgcacgggagggctgatttgccccgcgcaagcccttgaaaaacttcggcatttc
gtgagccgcagcgcctttgacatcgaagggctgggggccaagcagatcgaggcgttcttt
gccgaaggctgggtgaaggaacccgccgatatctttgaaattgaacacaaatatgccgaa
accctgcgcaagcgcgacgggtggggcgacaaatcggtcgccaagctggttgaggcgatc
aatgcgcgccgcagcatcccgctcaaccgcctgctattcgcgctcggcatccgccatctg
ggcgaaacggcagggcaggttctggcgcggcattatacaagctgggctgcgttctatgcc
gcaattcaggccgccgccccgctggaaggtgatgattgggacgagcttaacagcatcgac
ggcgttggccccgtgctggcaaccgcgctggtcacctattttcacaatgccgaaacgcgc
gcgagcgtcgagcggcttatcgcgcatctgacggttgaggatgttgcggcacccagtgcc
agcagctcgcccgtggccggcaaaaccgtggttttcaccggaacgctcgcgcggatgacc
cgcgccgaagccaaggccaccgctgaaaacctgggcgcaaaggtctccggctcggtctcg
gcaaaaaccgatatgctggttgcagggccgggcgcgggcgccaagctcaaaaccgcgcaa
agcctgggggtgcaggtgctatcggaggatgagtggcttgcgctcatcgcctga
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