Advenella alkanexedens: Q3V95_11550
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Entry
Q3V95_11550 CDS
T09248
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aaln
Advenella alkanexedens
Pathway
aaln03030
DNA replication
aaln03410
Base excision repair
aaln03420
Nucleotide excision repair
aaln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aaln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q3V95_11550 (ligA)
03410 Base excision repair
Q3V95_11550 (ligA)
03420 Nucleotide excision repair
Q3V95_11550 (ligA)
03430 Mismatch repair
Q3V95_11550 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aaln03032
]
Q3V95_11550 (ligA)
03400 DNA repair and recombination proteins [BR:
aaln03400
]
Q3V95_11550 (ligA)
Enzymes [BR:
aaln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q3V95_11550 (ligA)
DNA replication proteins [BR:
aaln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q3V95_11550 (ligA)
DNA repair and recombination proteins [BR:
aaln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q3V95_11550 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q3V95_11550 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q3V95_11550 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q3V95_11550 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
WKU18917
LinkDB
All DBs
Position
complement(2413613..2415655)
Genome browser
AA seq
680 aa
AA seq
DB search
MVIKHDPEALALQALRNEIRKHDQAYYVQDAPLISDAQYDALMRELQKLEAAHPEWITPD
SPTQRVGGAPLSSFSSIRHAVPMLSLGNAFDEADIAAFDKRVTDGLRDAGLLDLADRVEY
NCELKLDGLAIGIRYENGVLAHAATRGDGQTGEDVTGNIRTIASVPLRLQGDNLPAVFEV
RGEVLMNRQDFIKLNQQQGARGEKMFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEI
SGFTNPLPLTHADMLVWFAQLGFPLAQERRVVRGVDGMLEFYRHVSRIRADLPYEIDGVV
YKVNRLEAQQALGFVSRAPRFAIAHKFPAEEVSTKLLDIEVQVGRTGAITPVARLQPVFV
GGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVRPLPELRPVDAREFVMVTAC
PVCGSAIERLPDEAVSRCSGGLFCAAQRKQSILHAASRKALDIEGLGEKIVDQLVDQGWV
HSLADLYRLSVEKIMGLERMGRKSAENLVNAIEKSKQVELSRLIYALGIRHVGETTARDL
ALHFGSVDALMQASEEELLKVAEVGPVVSGSIRRFFAEQHNQDVIADLLQVGVQPKQIEK
SQNDTLAGNTFVLTGTLPAWSREEAGKLIMEAGGKVSGSVSKKTSYVVAGDDAGSKLEKA
RQLGVTVIDEDQLRQMLGLS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggtaatcaagcatgaccctgaagcgctggcactgcaggcgcttcgcaatgaaatccga
aaacacgaccaggcttattatgtgcaggatgcgccgcttatttctgatgcgcaatacgat
gcacttatgcgcgaactgcaaaaactcgaggccgcccatccagaatggattactcccgac
tctcccacccaaagggtaggtggcgctccgctgtcttctttttccagtatccggcatgcc
gtacccatgctgtctttgggtaatgcgttcgatgaagcggatattgccgcatttgacaaa
cgggttactgatggtttgcgtgatgccggtctgctggacctggccgatagggttgagtac
aactgtgagttaaaacttgatggcctggcgattggcattcgctatgaaaatggtgtactg
gcccatgcggcgacccgtggagacgggcaaaccggcgaagacgtgaccggtaatattcgt
accattgcttcggtacctttacgtttgcagggcgacaatctgccggccgtttttgaggtt
cgtggtgaggtgctgatgaatcgccaggattttataaagctgaatcagcagcagggtgcc
cgtggggaaaagatgtttgtgaatccgcgtaatgccgctgccggcagtttgcgtcagctt
gatccgcgtattaccgccaagcgtccattacggttttttgcctatggctggggagaaatc
tccggctttacaaaccccttgccattgactcatgccgatatgctggtctggtttgcccag
ctgggctttccattggcgcaagagcgcagggtagtcagaggcgtggacgggatgttggaa
ttttaccgtcatgtcagtcgtatacgtgctgaccttccttatgaaattgatggtgtggtc
tataaagtcaatcgtctggaagcccagcaggcactgggttttgtttccagggctcccagg
tttgccattgcacataaattcccggccgaagaagtcagcaccaaattgctggatatcgag
gtgcaggtcggacgcacgggtgccattacaccggttgcgcgtttgcagccggtgtttgtg
ggcggtgttacggttaccaacgcgaccttgcataatgaagatgaaatcaggcgcaaggat
gtccggattggcgatacggttattgtgcggcgtgcaggcgatgtgattcccgaagtggta
cgcccattgcccgagttgcgtccggtcgatgcccgtgagtttgtgatggtcacggcttgt
ccggtgtgtggttcagctattgagcgcttgcctgatgaagcggtgtcacgttgcagtggt
gggctgttttgtgcggcccaacgcaaacaaagcattttgcatgcggccagtcgcaaggcg
ctggatattgaaggtctgggtgaaaaaatcgtcgatcaattggttgatcagggctgggtt
cactccctggctgatttgtatcgcctgtctgttgaaaaaataatgggtcttgagcggatg
gggcgaaaatcggccgaaaacctggtgaatgcgatagaaaaaagcaagcaggttgagctt
tcccgcctgatttatgccctgggcatccgtcatgtaggcgaaacgacggcacgggatctg
gcgcttcattttgggagtgtggatgcgctgatgcaggcttccgaagaggaattgctgaaa
gtggctgaagttgggccggtggtatcgggctctattcgccgcttctttgccgagcagcat
aatcaggacgtgattgccgatttgctgcaagtgggtgtgcagcccaaacagattgaaaaa
agtcagaatgatacgctggctggtaatacctttgtgctgacgggtactttgcctgcctgg
tcacgcgaagaggccggcaagcttattatggaagctggtggcaaggtaagcggttcggta
tccaaaaaaaccagctacgtggtcgccggagacgatgccggcagcaaactggaaaaggca
cgccaattgggcgtaaccgtaatagatgaagaccagttaaggcaaatgctgggcctgtcc
tga
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