KEGG   Alternaria alternata: CC77DRAFT_968469
Entry
CC77DRAFT_968469  CDS       T05291                                 
Name
(RefSeq) Sm-like ribonucleo protein
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
aalt  Alternaria alternata
Pathway
aalt03018  RNA degradation
aalt03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aalt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CC77DRAFT_968469
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CC77DRAFT_968469
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aalt03019]
    CC77DRAFT_968469
   03041 Spliceosome [BR:aalt03041]
    CC77DRAFT_968469
Messenger RNA biogenesis [BR:aalt03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CC77DRAFT_968469
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CC77DRAFT_968469
Spliceosome [BR:aalt03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CC77DRAFT_968469
 Complex C
  U2 snRNP components
    CC77DRAFT_968469
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 29121364
NCBI-ProteinID: XP_018383354
JGI: 968469
UniProt: A0A177DDX1
LinkDB
Position
Unknown
AA seq 96 aa
MDEKEETNEPLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIAEEE
DDEQEPRVRTVKKQSEMLFVRGDSVVLIAPAEGASQ
NT seq 291 nt   +upstreamnt  +downstreamnt
atggacgaaaaagaagagaccaacgagcccctcgaccttgtgcgcctctgcattgacgaa
gttgtcattgtaaaactgcgcggcgaccgcgagctaaagggcagactacatgcatacgac
tcgcattgcaacctcgttctcggagacgtagaagaaaccatatatattgcagaggaagag
gatgacgagcaggagccccgcgtacggacggtcaagaagcagagcgagatgctgttcgta
agaggtgactcagtagtcttgatcgcaccagcggaaggagcatcgcaatga

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