Algihabitans albus: ABWI00_11415
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Entry
ABWI00_11415 CDS
T10848
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aalu Algihabitans albus
Pathway
aalu03030
DNA replication
aalu03410
Base excision repair
aalu03420
Nucleotide excision repair
aalu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aalu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABWI00_11415 (ligA)
03410 Base excision repair
ABWI00_11415 (ligA)
03420 Nucleotide excision repair
ABWI00_11415 (ligA)
03430 Mismatch repair
ABWI00_11415 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aalu03032
]
ABWI00_11415 (ligA)
03400 DNA repair and recombination proteins [BR:
aalu03400
]
ABWI00_11415 (ligA)
Enzymes [BR:
aalu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABWI00_11415 (ligA)
DNA replication proteins [BR:
aalu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABWI00_11415 (ligA)
DNA repair and recombination proteins [BR:
aalu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABWI00_11415 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABWI00_11415 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABWI00_11415 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABWI00_11415 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
XHC48400
LinkDB
All DBs
Position
2463227..2465362
Genome browser
AA seq
711 aa
AA seq
DB search
MTQQRKPADQLSEAEAAEELAALAAAIRRHDDLYYRQDAPEISDADYDALRRRNETLETA
FPELVRADSPSQRVGIAPAAGFSKVRHRVPMLSLQNAFADQDVEDFVARVRRFLSLQPID
PLSVVAEPKIDGLSISLRYERGRFRQGATRGDGTEGEDVTNNLRTLRDLPERLSGEVPDV
LEVRGEVYMTKRDFAALNARQEAAGGKLFANPRNAAAGSLRQLDSKITEQRPLRFFAYAW
GEVSRPIAATHWESLQRLKGWGFAINPLAARCRSAAEALEVYRKVEAERGTLDYDIDGVV
YKVDDLSFQERLGFVSRAPRWAIAHKFPAEQAQTLLEEIVVQVGRTGALTPVAHLKPVTV
GGVVVARATLHNPDEIARLDVRVGDSITVQRAGDVIPQILGPVLDKRPEDAEPYRFPDVC
PCALATPVVHEDGAVVARCSGELACPFQQVERLIHFVSRDAFDIEGLGDKQVRSFFEREL
IHTPADIFDLAESDKESLTPIRKLEGWGEKSADNLFAAIEARRRIPLERFIYALGIRQVG
QATAKLLARSYGTLVVWQDAMLAAAGERQAAPDAKKPDLVGEHYAELCNIHSIGTNVADE
ICSFFAEPHNLEVVRQLEVRLSVEAAAQPETADSPVAGKTVVFTGTLATMSRGEAKASAE
SRGAKVAGSVSKKTDYVVVGADAGSKATKAQELGLTILSEEDWLTLIGRGA
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaacagcgcaagcctgccgaccagttgagcgaggcggaggcggccgaggaactt
gcggccctggcggcggcgatccgccgccacgacgacctctactaccggcaggacgcgccg
gaaatctccgacgccgactacgatgccttgcgccggcgtaacgagacgctcgagaccgcc
tttccggagctggtacgcgcagacagcccaagccagcgcgtcggcatcgcacctgcggcg
ggcttctccaaggtgcgtcatcgcgtacccatgctcagcctgcagaatgccttcgcggac
caagacgtggaggacttcgtcgcgcgggttcgacgctttctgagcctgcaaccgatcgat
ccgctctccgtggtcgcggagccgaagatcgacggtctttcgatcagtctgcgctacgag
cgcggccgcttccggcaaggcgccacgcgcggcgacggtaccgagggcgaggacgtcacc
aacaatctgcggacgctgcgcgacctgccggagcgcctctccggcgaagtcccggatgtg
ctggaagtgcgcggcgaagtctatatgaccaaacgggatttcgcggccttgaacgcacgg
caggaggcggctggaggaaaactcttcgcaaacccgcgcaatgcggcggccggctccttg
cgacagctcgactccaagatcacagagcaacggccgctgcgcttctttgcctacgcctgg
ggcgaggtttcacggccgatcgcagcgacacactgggagtctctgcaacgcttgaagggc
tggggttttgcgatcaatcctctcgcggcgcgctgccggagcgcagcggaagcgttggag
gtctaccgcaaggtggaggcggagcgcggaacgctcgactacgacatcgacggcgtggtc
tacaaggtcgacgacctgtcctttcaggaacgcctcggcttcgtcagccgtgcgccgcgc
tgggccatcgcccacaagttcccggccgagcaggcgcagacgctgctggaggagattgtc
gtccaggttgggcggaccggcgcgctcactccggtcgcgcacctcaagccggtcacggtc
ggaggcgtcgtggtggcgcgcgccacactgcacaatcccgatgaaatcgctcggctggac
gtgcgggttggcgatagcatcaccgtccagcgcgccggcgacgtgattccgcagatattg
ggcccggtcctcgacaagcgtcccgaggacgccgagccctatcgcttcccggacgtctgt
ccctgcgccctcgcaacgccggtcgtgcacgaagacggcgccgtggtggcccgttgctcc
ggcgagctggcctgcccgttccagcaggttgagcgcctgatccacttcgtcagccgcgac
gccttcgacatcgaagggctgggcgataaacaggtgcgcagcttcttcgagcgcgagctg
atccatacgccggcagatatcttcgacctcgccgaaagcgacaaggagagcctgacgccg
atccgcaagttggaaggctggggcgagaagtcggccgacaacctctttgcggccatcgag
gcacggcggcggatccctctggagcgtttcatctatgcgctgggtatccgccaggtcggc
caggcgacggcgaagttgctggcacgcagctacggcactctggttgtctggcaagacgcc
atgctggcagccgccggcgagcggcaagccgcgccggacgcgaagaaaccggatctggtc
ggcgaacactatgccgagctctgcaacatccactcgatcgggaccaacgtcgccgacgag
atctgcagtttcttcgcggagccgcacaacctcgaggtcgtgcggcaattggaggtgcgg
ctgagcgtggaagcggcagcgcaaccggagacggccgactccccggtggccggtaagacg
gtcgtcttcaccggcactctggcaaccatgagccgcggcgaggccaaggcttcggccgaa
tcgcgcggcgccaaggttgccggctccgtttcgaagaaaaccgactatgtcgtggtggga
gcggatgcgggatcaaaggcgaccaaggcacaggagcttggcttgacgatcctcagcgag
gaagactggctgacactgatcgggaggggagcatga
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