Alcaligenes ammonioxydans: FE795_12255
Help
Entry
FE795_12255 CDS
T07763
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aamm
Alcaligenes ammonioxydans
Pathway
aamm03030
DNA replication
aamm03410
Base excision repair
aamm03420
Nucleotide excision repair
aamm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aamm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FE795_12255 (ligA)
03410 Base excision repair
FE795_12255 (ligA)
03420 Nucleotide excision repair
FE795_12255 (ligA)
03430 Mismatch repair
FE795_12255 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aamm03032
]
FE795_12255 (ligA)
03400 DNA repair and recombination proteins [BR:
aamm03400
]
FE795_12255 (ligA)
Enzymes [BR:
aamm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FE795_12255 (ligA)
DNA replication proteins [BR:
aamm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FE795_12255 (ligA)
DNA repair and recombination proteins [BR:
aamm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FE795_12255 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FE795_12255 (ligA)
MMR (mismatch excision repair)
DNA ligase
FE795_12255 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FE795_12255 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QXX79715
LinkDB
All DBs
Position
complement(2651996..2654083)
Genome browser
AA seq
695 aa
AA seq
DB search
MSLKRVQQLREELAQHNWAYYIQDAPSISDAQYDALMNELLALEAAHPEWITPDSPTQRV
GAAPLDGFATVQHAVPMLSLGNAFEDEEVQAFDKRVADTLVEAGMVGLDRRVDYLAEYKF
DGLAISLRYEQGLLVQASTRGDGTTGEDVTSNIRTVKSIPLRLRGDAAQLPAVLEVRGEV
LMNRADFERLNESQLKRGEKVFVNPRNAAAGSLRQLDPKVTAKRPLRFFAYGWGEISPLP
LTNQPQNTLFADVTGDGLPRDTQSGMMDWLESLGLPLSRDRKLVKGVQGLLDFYTQTQER
RSGLPFEIDGVVYKVNSLAAQRVLGYVARAPRFAVAHKFPAQEEMTRVENIEFQVGRTGV
VTPVARLKPVFVGGVTVTNATLHNEDEVRRKDVRAGDTVVVRRAGDVIPEVVAVVLEQRP
QDSVPFEMVKECPACHSALERLEGESAWRCTGGLICPAQRKQTLIHAASRKALDIEGLGE
KLVDQLVETGLVHTLADIFKLKVEKLVLLERMGRKSAENLIEAINKVREPALNRLIYALG
IRHVGETTARDLAQHFGTLQALEQADEEALLQVNEVGPVVAASVRHFFQEPHNREALDAL
LAAGVSPQQAQARANSANLPLAGKTVVITGTLPSMSRDEATRRVLEAGGKASGSVSKKTA
FVLAGAEAGSKLTKAQELGVTILDEAQFLALLAGD
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
gtgagtttgaagcgagtacagcagttacgtgaagaactggcccagcataactgggcctat
tacattcaggatgcgcccagcatttcggatgcgcaatatgacgcactgatgaacgagctg
ctggcgctggaggccgcgcacccggagtggattacccccgattctcccacgcagcgcgtg
ggcgcggctcccttggatggctttgcgacggtccagcatgccgttcccatgctctcttta
ggcaacgcctttgaggatgaggaagtccaggcatttgataaacgggttgccgacacgctt
gtcgaggctggtatggtgggcctggatcgtcgggttgattatctggcggaatacaaattt
gatggcctggcgatcagtctgcgctatgagcaaggcttgttggtgcaggcatcgacgcgg
ggtgatggcaccacaggcgaggacgtcaccagcaatattcgcaccgtcaaatccattccc
ttgcgtttgcgtggcgatgctgcgcaattgccggccgtgctggaagtgcgtggtgaagtc
ctgatgaaccgggcggactttgaacgtctgaacgagagtcagctcaagcgtggcgagaaa
gtctttgtcaacccgcgcaatgccgcggcaggcagcctgcgccaattggaccccaaagtc
acggcgaaacggcctttgcgtttttttgcctatggatggggtgaaatcagccccctgcca
cttacgaatcagccgcaaaataccttgtttgcggacgtgacgggagacgggctgcctcgt
gatacccagtcaggcatgatggactggctcgagagtctgggcttgcccctgagtcgcgat
cgtaagcttgtgaagggggtacagggcctgctggatttttatacccagactcaggagcgt
cgctccggcctgccctttgaaattgatggtgtggtttataaagtcaattccctggccgcg
cagcgcgtactgggttatgtggcgcgcgccccgcgctttgccgtcgctcataagttccct
gcgcaagaagaaatgacgcgcgtggaaaatattgagtttcaggtcggccgcaccggggtg
gtgactcctgtggcgcgtttgaaaccggttttcgtgggcggggttacggtgaccaatgcc
accttgcataacgaagatgaggtgcgtcgcaaagatgtgcgcgctggcgatacggtcgtg
gtacgccgagccggtgacgtgattccggaggtcgtcgctgtggtgctggaacagcgtccg
caagacagtgtgccgtttgaaatggtcaaggagtgtccggcatgccattccgccctggag
cggctggagggtgagtctgcctggcgttgcacaggcggcctgatttgccccgctcaacgc
aagcagaccctgattcacgcggccagtcgcaaagctctggatattgaaggcctgggggaa
aaactggtggatcagttggtggaaaccggactggtccataccttggccgatattttcaaa
ttgaaggtcgaaaagcttgtcctgctcgagcgtatgggacgcaagtctgccgagaatctg
attgaagcgatcaacaaggtgcgtgagccagccttgaatcgtctgatttacgccttgggt
atccgccatgttggggagacgacggcccgagacctggcccagcattttggcaccttgcag
gccttggagcaggccgatgaagaggcgctgttgcaggtcaatgaagttggccctgtcgta
gctgcttctgtacggcatttttttcaggagccgcataatcgtgaggcgctggacgccttg
ctggcagcgggagtgagcccccaacaggcgcaggctcgcgcaaatagtgccaatttgccc
ttggcgggcaaaacggttgtcatcacgggcacattgcccagcatgagccgtgatgaggcg
acacgccgcgtcttggaggccggcggcaaggccagtggatcggtctccaaaaagaccgcc
tttgtcctggccggtgccgaggctggctccaagctcaccaaggcacaggaattgggcgtg
accattctggacgaggctcagttcctggctttactggctggggactag
DBGET
integrated database retrieval system
