Arvicola amphibius (Eurasian water vole): 119811283
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Entry
119811283 CDS
T08327
Symbol
Smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119811283 (Smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119811283 (Smg6)
03032 DNA replication proteins [BR:
aamp03032
]
119811283 (Smg6)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
119811283 (Smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
119811283 (Smg6)
DNA replication proteins [BR:
aamp03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
119811283 (Smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
PIN_9
DUF1542
Motif
Other DBs
NCBI-GeneID:
119811283
NCBI-ProteinID:
XP_038180962
LinkDB
All DBs
Position
4:complement(46202175..46443113)
Genome browser
AA seq
1417 aa
AA seq
DB search
MAEGLERVRISASELRGILATLAPQAGSRENMKELKEPRQRKDNRRPDLEIYKPGLSRLR
NRPKTKEASGSEEFKDEIVNDEDSSVGNDKQLIKVCKELDSQQQNGPTDPENRQAQETFS
KTGGLEDRNLRIIKRIKKPDLQIYQPGRRLQPVTKESANRVDEEEILNQVEQLRIEEDEC
KGKVVKSEVENKPDKTETEKNQANDRVRTTKGEKGKKIEKGEGTKKVNDDSAQGKPGSVK
RYSRSDKRRNRYRTCSTSSAGSNNSAEGAGLTDNGCRRRRLDRTKERPRLKKQVSMSSTD
SLDEDRTDEPDALGPRRNSERKRHLERNWSGRGEGEQKSNGKENRGALRVTFDAETMNKD
SPMVRLARENVERIQSDKGLSSGGKGSEKQEFKNSKQELRGRGRGILILPAHTALSVSSA
GSPESTPLGPRLLFGSGSKGSRSWGRGGTTRRLWDPNNPDQKPALKSQTPQLHFLDTDDE
ISPTSWGDSRQTQASYYKFQNSDNPYYYPRTPGPTSQYPYTGYSPLQYPVGPTNGMYPGP
YYPGYPAPSGQYVCSPLPASTMSPEEIEQHVRNMQQQELHRLLRVADNQELQLSNLLSRD
RISTEGMEKMAQLRTELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLLKDP
NIENSDQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKYAL
ISAQRCMICQGDISRYREQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRK
LDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFELSPDQWRKGKKST
FRHVGDDTTRLEIWIHPSHSRSSQGTESGKDSEQENGLGALSPSDLNKRFILSFLHAHGK
LFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSEE
CRSVIQEQATSLGLAMFSLLVQRCTCLLKDSAKAQLSSPEDQDDQDDIKVSSFVPDLKEL
LPSVKVWSDWMLGYPDTWNPPPTSLDLPLQVAVDVWSTLADFCNILTAVNQSEVPLYKDP
DDDLTLLTLEEDRLLSGFVPLLAAPQDPCYVEKTSDKVIAADCKRVTVLKYFLEALCGQE
EPLLAFKGGKYVSVAPVPDTMGKEMGSQEGKQLEDEEEDVVIEDFEEDSEAEGSGGEDDI
RELRAKKLALARKIAEQQRRQEKIQAVLEDQSQMRQMELEIRPLFLVPDTNGFIDHLASL
ARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLERRFESRD
SCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDYMPTSKEEPIRL
LREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQVG
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggggttggagcgtgtgcggatctccgcgtccgagctgcgagggatcctggcc
actctggctccgcaggccgggagcagagaaaacatgaaggaattaaaggaacccaggcaa
cgcaaagataataggcgtccagatttggaaatctataaacctggactttctcgactaagg
aacagacctaaaactaaggaggcttctgggagtgaggaatttaaggatgagattgtgaat
gacgaagattcttctgttgggaatgataagcagcttattaaagtttgcaaggaattggac
agccaacagcaaaatggtcctacagatccagaaaatcgtcaggcacaggagactttctca
aagactggtggactagaggaccggaatctaagaatcatcaagagaataaaaaaacctgac
cttcagatctatcagcctggaaggcgtttgcaacctgtaaccaaagagtcagctaacagg
gtagatgaggaagaaatccttaaccaagtggaacaattgaggattgaggaggatgagtgt
aagggaaaagttgtaaaatcagaagtcgagaataaaccagacaaaactgagacagaaaag
aaccaagctaatgaccgagtaagaactaccaagggagaaaaaggaaaaaagattgaaaag
ggggaggggacaaagaaggtgaatgatgactctgcccaagggaaaccaggttctgtaaag
cgttattcccgatcagacaaacgaaggaatcgctaccgcacttgcagtaccagctcagct
ggtagcaacaacagtgccgaaggagctggcctgactgataatggctgtcgccggcggcgc
ttggatcggaccaaggagaggccacgactgaagaagcaggtgtctatgtcctcaaccgat
tccttagatgaggatagaactgatgagcccgatgcattaggacctaggaggaactcagaa
aggaagaggcatttagaaagaaattggtctggccgaggtgagggtgaacagaaaagcaat
ggcaaagaaaaccgaggcgcccttcgagtcacttttgatgcagaaaccatgaataaagat
tcccccatggtgaggttagccagggagaatgtggaaagaatacagtctgacaaaggcctg
agcagtgggggcaagggctctgagaagcaggagttcaaaaactcaaaacaagaacttcgg
ggtcgtggtagaggcattctgattctgcctgctcatactgccctatctgtcagttcagcg
ggttctccagagtctacacctttgggaccccggcttttatttggatctggtagtaaagga
tctcgtagttggggccgtggaggcactacccgccgactatgggacccaaacaatcctgat
cagaagcctgctctgaaaagccagacacctcagctacatttcttggacactgatgatgaa
atcagccctacatcttggggtgattcacgtcagacccaagcttcttactataaatttcaa
aactctgacaacccctattattaccctcggacaccgggccctacctctcagtatccctat
acaggctatagccctctacagtacccagtgggtcctacaaatggtatgtatccagggcct
tactacccaggctatcctgccccctcagggcagtatgtatgtagtcctctccctgccagc
accatgagtcctgaggagatagagcaacacgtgcggaacatgcagcaacaggagctacat
aggcttctccgagtggctgacaaccaggaattgcagcttagcaacttgctctccagggac
cgcatcagtactgagggcatggagaagatggctcagctcagaactgaactactgcagctg
tatgagcgctgtattctattagatattgaattctctgacaatcagaatgtagatcagatc
ctgtggaagaatgctttctatcaggtgattgagaaattcaggcagcttctcaaggatcca
aatattgagaactcagaccagattcggaacagactcttggagctcttggatgagggtagt
gacttctttgatagtttgcttcagaaactacaggttacttataagttcaaactggaggac
tacatggacgggcttgccattcgaagcaagcctttacgaaagacagtaaaatatgctttg
atcagtgctcaacgctgtatgatttgccaaggagatatctctaggtatcgggagcaagcc
aatgatacagctaactatgggaaggcacgcagttggtacctgaaggcccagcatattgct
cccaagaatgggcgcccctataaccagttggctttactagcagtgtatacgaggaggaag
cttgatgctgtatattattatatgcgcagtttagcagccagcaaccctatcctgactgcc
aaagagagtctcatgagtttatttgaagagactaaacgaaaggctgaacagatggaaaag
aagcagcatgaggaatttgaactgagtcctgatcagtggcgtaaaggaaagaagtctact
ttccggcatgttggggatgacactactcgcctggagatctggattcatccatcccattct
cggtcctcccagggcactgagtctgggaaggattctgagcaggagaatggtttgggcgcc
ctgagtcccagtgatctgaacaaaaggttcatcctcagttttctccatgcccatgggaag
ctgtttacccggattgggatggagacattccctgcagtggctgagaaagtccttaaggag
ttccaagtgttgctgcaacatagcccatctcctattggaagtacccgtatgttgcagctt
atgaccatcaacatgtttgctgtacataactcccaattgaaagactgcttctcagaagag
tgtcgctctgtgatccaggaacaagctacatccttgggcttggctatgttttctctactg
gtgcagcgctgcacatgcttacttaaggactctgccaaagctcagctgtcctctcctgag
gaccaagatgaccaagatgacatcaaggtgtcttccttcgtcccagacctgaaggagctg
ctccccagtgtcaaagtctggtcagattggatgcttggttacccagacacctggaatcct
ccacccacatctttggatctgcccttgcaggtggctgtggatgtgtggtcaacactggct
gacttctgtaacatactgactgcagtgaatcagtctgaggtgccactgtacaaggacccg
gatgacgacctcacccttcttaccctggaagaggatcggctcctctctggctttgtcccc
ttgctggctgcccctcaggacccctgctacgtggagaaaacctcggataaggttattgca
gctgactgcaaaagggtcacagtgctgaagtattttctggaagccctttgtggacaagaa
gagcctctgctggcattcaagggtggaaaatatgtgtcagtggcacccgtcccagacacc
atgggaaaggaaatgggaagccaagagggaaaacaactggaagatgaggaagaagatgtg
gtaattgaagactttgaggaagattcagaggctgaaggcagtgggggcgaggatgatatc
agggaacttcgggccaagaagctggcactagcgaggaagatagctgagcaacagcgacgc
caggaaaagatccaggctgttttggaagatcagagtcagatgaggcagatggagctggag
atcagacccttgttcctcgtaccagataccaacggcttcattgaccacctggccagtctg
gctcgactgctggagagcaggaagtacatcctggtggtgcccctcattgtgatcaatgag
ctcgatggccttgccaaagggcaggagacagaccaccgggctgggggctatgcccgtgtg
gtacaagaaaaggcccggaaatccatcgagttcctcgaacggagatttgagagtcgggac
tcttgcctgcgggccttgactagccgtggcaatgaacttgaatccatcgccttccgcagt
gaggacatcactggacaactgggtaacaacgatgacttgatcctctcctgctgcctgcac
tactgcaaagacaaggctaaggattacatgcccactagcaaagaggaaccgatccgcctg
ctacgggaggtggtgctgctgactgatgaccggaacctgcgggtgaaggcactgacaagg
aatgtgcctgtgagggacatcccagccttccttacgtgggcccaggtgggctga
DBGET
integrated database retrieval system
