Arvicola amphibius (Eurasian water vole): 119817660
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Entry
119817660 CDS
T08327
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03015
mRNA surveillance pathway
aamp05014
Amyotrophic lateral sclerosis
aamp05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119817660
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
119817660
05022 Pathways of neurodegeneration - multiple diseases
119817660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119817660
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
119817660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
Motif
Other DBs
NCBI-GeneID:
119817660
NCBI-ProteinID:
XP_038190934
LinkDB
All DBs
Position
6:7717488..7731304
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AA seq
414 aa
AA seq
DB search
MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVA
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
NNQGGNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQSQGSMQ
REPNQTFGSGNNSYSGSNSGAPLGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatacatccgggtaacagaagatgagaacgatgagcccattgagataccatca
gaagacgatggtacagtgttgttgtccacagttacagcccagtttccaggggcctgcggc
ctgcgctaccggaatcccgtgtctcagtgtatgcggggtgttcggctggtggaaggaatc
ctgcatgccccggatgccggctggggaaatctggtgtatgttgtcaactatcctaaagat
aacaaaagaaaaatggatgagacagatgcttcctcggcagtgaaggtgaaaagagcagtc
cagaaaacatctgatctaatagtgttgggtctcccctggaaaacaacagaacaagatctt
aaagactatttcagcacttttggagaggttcttatggttcaggtcaagaaagatcttaaa
actggtcactcaaaagggtttggctttgttcggtttacggaatatgaaacccaagtgaaa
gtaatgtcacaacgacatatgatagatggacgatggtgtgactgtaaacttccgaattct
aagcaaagcccagatgaacctttgagaagcagaaaggtgtttgttgggcgttgtacagag
gatatgactgctgaagagcttcaacaattcttctgtcagtatggagaagtagtagatgtc
ttcattcccaaaccattcagggcttttgcctttgttacctttgcagatgataaggttgcc
cagtctctttgtggagaggatttgatcattaaaggaatcagcgtgcatatatccaatgct
gaacctaagcataatagcaatagacagttagaaagaagtggaagatttggtggtaatcca
ggtggctttgggaatcagggtgggtttggtaacagtagagggggtggagctggcttggga
aataaccagggtggcaatatgggtggaggaatgaacttcggagcttttagcattaatcca
gcgatgatggctgcagctcaggcagcattgcagagcagttggggtatgatgggcatgtta
gccagccagcagaaccagtcaggtccatctggtaataaccaaagccagggcagcatgcaa
agggagccaaatcagacatttggttcagggaataattcctatagtggttctaattctggt
gcccctcttggttgggggtcagcatcaaatgcagggtcaggcagtggttttaatggcggc
tttggctcaagcatggattctaaatcctctggctggggaatgtag
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