Arvicola amphibius (Eurasian water vole): 119826628
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Entry
119826628 CDS
T08327
Symbol
Ddx58
Name
(RefSeq) antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04064
NF-kappa B signaling pathway
aamp04622
RIG-I-like receptor signaling pathway
aamp04623
Cytosolic DNA-sensing pathway
aamp05160
Hepatitis C
aamp05161
Hepatitis B
aamp05162
Measles
aamp05164
Influenza A
aamp05168
Herpes simplex virus 1 infection
aamp05169
Epstein-Barr virus infection
aamp05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
119826628 (Ddx58)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
119826628 (Ddx58)
04623 Cytosolic DNA-sensing pathway
119826628 (Ddx58)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
119826628 (Ddx58)
05160 Hepatitis C
119826628 (Ddx58)
05171 Coronavirus disease - COVID-19
119826628 (Ddx58)
05164 Influenza A
119826628 (Ddx58)
05162 Measles
119826628 (Ddx58)
05168 Herpes simplex virus 1 infection
119826628 (Ddx58)
05169 Epstein-Barr virus infection
119826628 (Ddx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
aamp04054
]
119826628 (Ddx58)
Enzymes [BR:
aamp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119826628 (Ddx58)
Pattern recognition receptors [BR:
aamp04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
119826628 (Ddx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_25
Syntaxin_2
Motif
Other DBs
NCBI-GeneID:
119826628
NCBI-ProteinID:
XP_038203977
LinkDB
All DBs
Position
11:complement(93730103..93768166)
Genome browser
AA seq
925 aa
AA seq
DB search
MTAEQRQNLQAFRDYVRKTLDPTYILSYMGPWLQDEEVQFIQAEKNNKGPMEAASLFLQY
LLQLQTEGWFRAFLDALYNAGYCGLYEAIESWDFQKLEKLEEHRLLLQRLQPEFKTRINP
TDILPELSECLINQECEEIRQICFTKGMMAGAEKMVECLLRSDKENWPKVLKFALEKENN
TFSELWIVEGFKRVESKAVEDDEMEMSSIQIFIQEEPECQVLSQNPCAPSEASSNNFNGP
LKPRSYQLELALPAEKGKNTIICAPTGCGKTFVSLLICEHHLKTLPHGRKGKVVFFANQI
PVYEQQATVFSRYFERLGYSVAGVSGATTDNVSVQDIIENKDIIILTPQILVNSLNDGTI
PSLSVFTLMIFDECHNTSKHHPYNQIMFRYLDHKLGGSPGPLPQVIGLTASVGVGDAKTV
EEAMLHICKLCAALDTSVIATVRDNVEELEQVVYKPQKFFRKVESRTTNTFKSIISQLMK
KTEELAKNVSEELGKLFQIQNREFGTQRYEQWIVAVHKACMVFQMPDKEKESSICRALFL
YTSHLRKYNDALIISEDAQMKDALNYLKAFFRDVKEAAFDETEQDLTRRFEEKLEELEKV
SMDPSNENPKLRDLYLILQEEYHLKPETKTILFVKTRALVDALKKWIEENPALGFLKPGI
LTGRGKTNQTTGMTLPAQKCALEAFRASGDNNILIATSVADEGIDIAQCNLVILYEYVGN
VIKMIQTRGRGRARDSKCFLLTSNADVIEKEKVNMFKEKIMNESISMLQTWDEMKFEKTV
QRIQSDEKFIRDRQRKPQPAPDKENKKLLCGKCKAFACYTADIRVVEKSHYTVLGNAFKE
RFVSKPHPKPKIYDSFEKKAKIFCAIQKCCHDWGIHVKYKTFEIPVIKIESFVVEDIASG
VQRRHAKWKDFHFERIQFDPAEMPK
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgacagctgaacagcggcagaatctgcaagcattcagagactatgtcaggaagactctg
gaccccacctacatcctcagctacatgggtccctggctccaggatgaggaggtccagttc
atccaggctgagaaaaacaacaagggccccatggaagctgcctccctgttcctccagtac
ctgctgcagctgcagacggaaggctggttccgggcctttttggatgccctgtacaatgca
ggttactgtggactttatgaagccatcgaaagttgggatttccaaaaacttgaaaagtta
gaggaacacagattacttttacagcgtttacagccagaatttaagaccagaatcaaccca
acagatatccttcctgaattgtctgaatgcttgattaatcaggaatgtgaggaaatcaga
cagatctgtttcaccaaagggatgatggcaggtgcggagaagatggttgaatgtcttctc
agatcggataaggagaactggcccaaggttttgaaatttgctttggagaaagaaaacaac
acgttcagtgaactgtggattgttgaaggtttcaaaagggtcgaaagtaaagctgttgaa
gatgatgaaatggagatgtccagcatacagattttcatacaagaggagccagaatgccag
gttctcagtcagaatccctgcgctccttcagaggcatcgtctaataattttaatggcccg
ttgaaacccagaagttaccaactggagcttgctctgcctgctgagaaagggaaaaataca
ataatatgtgctcctactggttgtgggaaaacctttgtgtcgcttcttatatgtgagcat
catctgaaaacattgccacatggacgaaaagggaaagtcgtcttttttgctaatcaaatt
cctgtgtatgaacaacaggcaactgtgttctcacgctattttgaaagacttgggtacagc
gtagcgggtgtttctggggcaacaactgataatgtctccgtgcaggacattattgagaac
aaagacatcatcatcctcacgccccagattcttgtgaacagtctcaacgatggaaccatc
ccctcgctgtctgtcttcaccctgatgatcttcgacgaatgccataacaccagtaaacac
cacccgtacaatcagatcatgttccgatacctagatcacaaactcggagggtcgccaggc
ccactgcctcaggtcatcggactgactgcctcagtgggtgttggagacgccaaaactgta
gaggaagccatgctgcatatctgcaaactctgcgccgcccttgacacgtctgtgatcgcc
acggtcagagacaacgtggaggaactggagcaggttgtttataaaccccagaaattcttc
aggaaggtggaatcgcggactaccaacacatttaaatccatcatatctcagctgatgaag
aagacagaggaactggcaaagaatgtctctgaggaactcggaaaattatttcagattcaa
aacagagaatttggcacgcagagatacgaacagtggatcgttgcagttcacaaagcatgc
atggtgtttcagatgccggacaaagagaaggagagcagcatttgcagggcgctctttctg
tacacgtcccatttgcggaaatacaacgatgctctcatcatcagtgaggatgcccagatg
aaagatgctcttaattacctcaaagccttcttccgcgatgtcaaagaagcagcatttgat
gagactgagcaagatcttacacggaggtttgaagaaaagctggaggaactagagaaagtt
tccatggatcccagcaacgagaatcccaaactcagagacctctacctgatcttacaagaa
gagtaccacctaaagccggagaccaaaaccattctttttgtgaaaaccagagcacttgtg
gatgctttaaagaaatggattgaagaaaatcctgcactcggctttctaaagcctggcata
ttgactggacgtggcaaaacaaaccagacaacaggaatgacactcccagcacagaagtgt
gcgctggaagcgttcagagccagcggagataacaacatcctgattgctacctcggtcgct
gacgaaggcattgacatcgctcagtgcaacctggtcatcctgtacgagtatgtgggcaat
gtcatcaaaatgatccaaaccagaggcaggggaagagcaagagacagcaagtgcttcctc
ctgaccagcaatgctgacgtcattgagaaagaaaaggtgaacatgttcaaggaaaaaata
atgaatgaatccatttcaatgcttcagacatgggatgaaatgaaatttgagaaaacggtt
caacgcatacagtcggatgaaaaattcatcagagatcgtcaacgcaagccacaaccggcc
cctgataaggaaaataagaaactcctgtgtgggaaatgcaaggcctttgcgtgctacacg
gctgacatccgagtggtggagaaatcccactacactgtgcttggaaatgcttttaaggag
cgctttgtgtctaagccgcaccctaaaccaaagatctatgacagtttcgagaagaaagca
aaaatattctgtgccatacagaagtgctgccacgactgggggatccatgtgaaatataag
acgttcgagattccagtcataaaaattgaaagttttgtggtggaagatatcgcaagtgga
gttcagaggcggcatgcaaagtggaaggactttcattttgaaaggatacaatttgatcct
gcagaaatgcccaaatga
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