Asterias amurensis (Northern Pacific seastar): 139939642
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Entry
139939642 CDS
T10870
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
139939642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aamu03400
]
139939642
Enzymes [BR:
aamu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
139939642
DNA repair and recombination proteins [BR:
aamu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
139939642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
DNA_ligase_IV
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
PTCB-BRCT
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
139939642
NCBI-ProteinID:
XP_071791788
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All DBs
Position
7:12253066..12283490
Genome browser
AA seq
935 aa
AA seq
DB search
MSDGRDNPSTSTPAAATAGASEDAATVASHIPFAELAGFLEKVQKKHGGEAKKQMFREFL
DKWREFHKHLHEDDPTTKDNFYPVMRLLLPQLERERIAYGIKEHTLAKLYIDILGLGKES
QDAKKLINYRAPTAKQEAGDFASVAYFVLRNRCPEKGSLTIQDVNTCLDAIAGSNAAKKK
DVVKKNFMHLLRNTSALEQKWLVRMIMKDMKSGLSQVAIFHIFHPDAEDFFNVTNNLSKL
CADLNDPRVRMNEVGISVFSAFSPMLGMRANTNQVEKLMEHKPFFIETKLDGERMQLHKE
GNSYKYFSRRSHDYSRSFGETPDDGSLTPYIANCFKRDVRNCILDGEMMAYNPETKTFMT
KGENFDIKTMRDDQDLQVCYCVFDILLFNDKKLANLPLHERVQYISKVFNPVDGRLHIVE
RREANSKLDVVTALNDAIDSREEGIMIKNPNTAYRPDRRKGSGWLKIKPEYVDNLMDELD
LLIVGGYFGKGIRSQMVSHFLLAVAEPSKVPGEHPTNFIAFTKVGSGYSLKELYDFNQRL
LPHLKVFKKERPPSFLQFTKEKPEMYVKPENSFILQVKATEISSSSSYPTGCTLRFPRVE
KVREDKEWHQCMTTEELDNLRQSSEGKLATRHAGMGVEDEVPSKKKKASSRIAKPVGVAA
RFMAADVSEVTKVSEMFADREFCIVNNPTSHSKADLEKKIVEYGGQVAQNPGGETFCVLA
NKINLKVRNIISSDIYDVVSTDWLLKCLDAQKCLPWLPSHMIHVSPETKVQFSLLYDRHG
DSYTEDVDTDKLKEIFEKVGKEGTYPSLGNESIAELEQQYFPGESPLGLFRLCKVYMDSC
LVIGDESTHIKDCSLDLVTLELRFYGATISTKMDEDVTHVVLDRIDKTRLPSYKLLMRER
QRKFHLVSPEWVYACIDSGKILSERRFELGLSATV
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatggaagagataacccatcaacgtcaactccagcagcagcaactgcaggagct
agtgaggatgcagcgacagtggccagccacattccttttgctgaacttgctggattcttg
gagaaggtacagaagaagcacggcggcgaggccaagaaacagatgttccgagagttcctt
gacaagtggagagagtttcacaaacatcttcatgaggatgatccaacgacgaaagacaat
ttctatcctgtgatgagactgttactgccgcaactggaaagggaaagaatcgcatacggt
atcaaggagcataccctagccaagttgtacattgacattcttggcttgggtaaagaaagc
caagatgctaagaagttaatcaattaccgagcaccaactgccaaacaggaagctggagac
tttgccagtgttgcatattttgtgctcagaaacagatgcccagaaaaggggagtttgacg
attcaggatgtcaatacatgccttgatgccatagcgggaagcaacgctgctaagaagaag
gatgtagttaagaagaacttcatgcacctgttgaggaacaccagcgcactggaacagaag
tggctggtcagaatgatcatgaaggatatgaagtctggcctgagtcaagttgcaatcttc
catatctttcatccagatgcagaagacttcttcaatgtcacaaacaacctatctaagttg
tgtgctgatttaaatgatcctcgggtcagaatgaatgaggttgggatcagcgtattttca
gccttcagcccaatgcttggaatgagagccaacacaaaccaggttgagaagttaatggag
cacaaaccattcttcatcgagacaaagcttgatggagagagaatgcagctccacaaggaa
ggaaactcatacaagtacttctcaagaaggtcccacgactattcccgttcctttggcgag
actccagatgatggcagtctgacaccatacatcgcaaactgcttcaaaagggatgttcgt
aactgcatactggatggagagatgatggcctacaatccagaaacaaaaaccttcatgacc
aagggagagaattttgatattaagacgatgagggatgaccaagatcttcaggtatgttac
tgtgtctttgacattcttctcttcaatgataagaaactcgccaaccttccgctccatgag
agggtacagtacattagcaaggttttcaatccagtggatgggagacttcacattgtagag
agaagggaagcaaattcaaaactagacgttgtgacagccttgaatgatgcaattgatagt
agagaagagggaatcatgatcaagaatccaaacacagcataccggccagacaggcgaaaa
ggcagtggatggttgaaaatcaaaccagaatacgtagacaatttgatggatgaactggac
ttattaatagttggaggttactttggcaaagggatccgctcacagatggtatctcatttt
ctattggctgttgccgaaccatccaaagtacccggtgaacatccaaccaactttatagcc
ttcacaaaggttggctcagggtactcattgaaagagttgtacgatttcaatcaacggctt
cttcctcatctgaaagtcttcaagaaagagcgccctccatcattcttacaatttacaaag
gaaaaacctgaaatgtacgtgaagccagaaaactcttttatccttcaagtgaaagccaca
gaaattagctcatcgtccagttatccaacgggctgcacgcttcgtttcccgcgggttgag
aaggtccgagaggataaagaatggcatcagtgcatgacaacagaggaactggacaacctc
agacagtcttcggaggggaagttagcaacaaggcatgctgggatgggcgttgaagatgaa
gtcccaagtaagaagaagaaggcatcttctaggatcgccaagccagtgggagtagctgct
cgcttcatggcagctgatgtgtcagaggtcacaaaggtatctgagatgtttgcagatcgt
gagttctgtatcgtcaacaatcccactagccactctaaggctgacttggagaagaagatt
gttgagtacggaggacaggtggcgcagaaccctggcggtgaaacattctgtgtcttggcc
aacaagatcaatcttaaagtcagaaacattatcagctctgacatctatgatgttgtcagt
acggactggctgttaaagtgtttggatgcacagaagtgccttccatggttaccaagtcac
atgatccacgtctccccggagaccaaagtccagttctctttgctgtatgatcgtcatggc
gatagctacactgaggatgtagacactgacaaactcaaggaaatatttgagaaagttgga
aaggagggcacctacccctcgttaggaaatgaatccatagccgagctagagcagcagtac
ttcccaggggaatcccctctagggctcttcaggttgtgcaaggtctacatggattcgtgt
ctggtcattggtgatgagtcaactcatatcaaagactgcagtctggacttggtcaccttg
gagctacgcttctatggtgcaaccatctcgaccaagatggacgaagatgtcacacacgta
gtgttggatagaatagacaaaacccgtcttccttcctacaagttactgatgagagaaagg
cagcgcaagttccaccttgtatcgccggaatgggtgtatgcttgtatcgactccggcaaa
atactatcagaaagacggtttgagttgggactttcagcaacagtctag
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