Asterias amurensis (Northern Pacific seastar): 139948896
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Entry
139948896 CDS
T10870
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139948896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamu03041
]
139948896
Spliceosome [BR:
aamu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139948896
Complex C
U5 SnRNP specific factors
139948896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
Septin
Roc
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
139948896
NCBI-ProteinID:
XP_071803355
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All DBs
Position
16:complement(15781577..15805494)
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AA seq
971 aa
AA seq
DB search
MDADLYDEFGNYIGPELESDSEDEESEEERPEPQLDGDDDDDEEPMESGDISQAVVLHED
KKYYPTAEEVYGPDVETIVHEEDTQPLTDPIIAPVKQKKFTMTEQELPVTTYDMEFLADM
MDNAELIRNVTLAGHLHNGKTSFVDCLMEQTHPELQAKEDGGIRYTDTLFTEQERGVSIK
AQPVTLVMPDSKGKHYLMNIMDTPGHVNFSDEVTASFRLSDGVVIFVDAAEGVMLNTERL
IKHAIQEQLAVTICINKVDRLVLELKLPPADAYYKLRNIITEINGILSVFSDEAEPLMVS
PLLGNVCFASSQYSVCFTLQSFAKIYADTYGGIEYQEFAKRLWGDIYFNPKTRKFTKKSP
VSTAQRSFVEFILEPMYKLFAQVVGDVDSTLPGVLDELGIHLTKEEMKMNIRPLLKLVCS
KFFGDFTGLVDMCVKHIPSPVAVAKKKIEHLYTGPMDSDLADTMVECDPEGPLMLHTTKM
YSTEDGVSFHAFGRVMSGTINANQEVRILGENYTIEDEEDSRISLVGRLWISEARYKIEV
NRVPAGNWVLIEGVDEPIVKTATITESRGLDEVYIFRPLKFNTSSVIKIAVEPVNPSELP
KMLDGLRKVNKSYPLITTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVA
FCETVVETSSLKCFAETPNKKNKLTMIAEPLEKGLAEDIENEVVQINWNRKRLGEFFQTK
YDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLNSVKDSIVQGFQWGSREGPLCD
EPIRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYCFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVF
HHWQIVPGDPLDKSIIIRPLEPQPAMHLAREFMIKTRRRKGLSEDVSINKFFDDPMLLEL
ARQDVMLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgatctgtatgatgagttcggcaactacatcggcccagaactcgagagtgac
tctgaagatgaagagtcggaggaagaacgaccagaacctcagttagatggggatgacgac
gatgatgaagagccaatggaatcgggcgatatctcgcaggctgtcgttctccatgaagat
aagaaatattacccaacggccgaggaggtttacggtcccgatgtggagacaattgtacat
gaagaagacacacaacctctcacagatcctataatcgcaccggtgaaacagaagaagttt
acaatgacagaacaagaattacctgtgaccacctacgacatggaattcctggcagacatg
atggacaacgcagagctcattagaaacgtcacattagctggtcatctgcataatggcaag
acttcatttgttgattgcctaatggagcaaactcatccagaattacaagccaaagaagac
ggagggatcagatacacagatacactcttcacagaacaagagaggggtgtaagcatcaag
gcccagcctgttacgttagttatgccggacagtaaaggcaaacattacctaatgaacatc
atggacacacccggtcatgtaaatttctctgatgaagtcacagcgtcattccgtctcagc
gacggtgtagtgatcttcgtggatgctgcggagggcgtcatgttgaacacggagcgtctc
atcaaacacgccatacaggaacagctcgctgtcaccatatgcatcaataaagttgataga
ctggtgctggagttgaaactcccacctgcggacgcctattacaaactgagaaatattatc
acagagattaatgggattttgagtgtgttctctgatgaggcagaacccctgatggtgtcg
ccgttgctaggcaacgtctgttttgccagctcacagtacagtgtgtgcttcacgttgcaa
tcgttcgctaagatctacgcagatacctacggaggtatcgagtatcaagagtttgccaag
aggctatggggagatatctacttcaacccaaagacacggaagtttactaagaagtctcca
gtcagtactgcacagcgtagttttgtggagttcatacttgaaccgatgtacaaacttttt
gcacaggttgtaggagatgtagattcaacattaccaggtgttctggatgagctgggaatc
catctcactaaggaagagatgaagatgaacattagaccgctcctcaaactcgtctgcagt
aaattctttggcgattttacagggttggtggatatgtgcgtgaagcacatcccgtctcca
gttgcagttgcaaaaaagaagattgagcatctttacaccggacccatggactcggacttg
gctgacaccatggtggaatgcgatcccgagggtccactgatgctccacacaactaagatg
tacagcacagaggatggagtaagcttccatgcttttgggcgggtaatgagcggcaccatc
aacgctaaccaggaagtgagaatccttggtgagaattacaccatcgaggacgaggaagac
tcgaggataagtctcgtcggaagactgtggatctcagaagcaagatacaagattgaagta
aacagagtaccagcaggaaactgggttttaattgaaggcgttgatgaacccatcgtaaag
acggcaacaatcacagagagcagaggtttagacgaggtgtatatcttccgacctctgaag
ttcaacaccagctcagtaatcaagattgccgtagagccggtcaacccctcggagcttcct
aagatgttggacggactaagaaaggtcaacaagagttatcctctcatcactacaaaggta
gaagagtctggtgagcatgtggttctcggaacgggcgagttgtacctagactgtgtcatg
catgaccttaggaaaatgtactcagaaatagatatcaaagttgctgatccagttgttgct
ttctgcgagacggtggtcgagacgtcatctctgaaatgtttcgctgagacaccaaacaaa
aagaacaagctaacaatgatcgccgagcctcttgagaagggcctagctgaagacatcgaa
aatgaagtggtacaaatcaactggaacaggaaacgtttgggagagtttttccagaccaag
tatgactgggatttactggctgctcgttctatttgggcgttcggtcctgatgcaaccggc
cccaatattctggtagatgatacgctcccatctgaggttgacaaggcattactgaactcc
gtcaaggacagcattgtgcaaggattccagtggggatcaagggaaggtccactgtgtgat
gaaccaattcgtaatgtgaagtttaagattctggatgctgtgattgccggagagccgatc
catcgtggtggaggtcaaatcattcctacagcaagacgagtcgcatactctgcattcctt
atggccactcctcgcctgatggagccctactgttttgttgaagttcaagcacctgctgat
tgtgtatctgcagtttacacagtactggcaagaagaagaggtcacgttacccaagatgca
cctgttccagggtcaccattgtatacaatcaaagccttcattccagcgattgactcgttt
ggattcgagacggatctgagaactcacactcaggggcaggcgttctgtctctcggtcttc
catcactggcagatcgtacctggtgatcccttagataagagtatcatcattcgacctcta
gaaccacaacctgccatgcaccttgctagagaattcatgattaagactcgacgaaggaag
ggattgagtgaggacgtcagcatcaacaagttcttcgacgatcctatgttgttggagttg
gctcgacaggatgtgatgttgaactaccccatgtag
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