Anoxybacteroides amylolyticum: GFC30_713
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Entry
GFC30_713 CDS
T04397
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aamy
Anoxybacteroides amylolyticum
Pathway
aamy03030
DNA replication
aamy03410
Base excision repair
aamy03420
Nucleotide excision repair
aamy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aamy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GFC30_713 (ligA)
03410 Base excision repair
GFC30_713 (ligA)
03420 Nucleotide excision repair
GFC30_713 (ligA)
03430 Mismatch repair
GFC30_713 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aamy03032
]
GFC30_713 (ligA)
03400 DNA repair and recombination proteins [BR:
aamy03400
]
GFC30_713 (ligA)
Enzymes [BR:
aamy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GFC30_713 (ligA)
DNA replication proteins [BR:
aamy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GFC30_713 (ligA)
DNA repair and recombination proteins [BR:
aamy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GFC30_713 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GFC30_713 (ligA)
MMR (mismatch excision repair)
DNA ligase
GFC30_713 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GFC30_713 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RNA_pol_A_CTD
Zn_ribbon_NUD
5_3_exonuc
BRCT_2
UBA_HOIP
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
ANB62063
UniProt:
A0A160F7M1
LinkDB
All DBs
Position
690058..692061
Genome browser
AA seq
667 aa
AA seq
DB search
MAMERIEELRRLLNQYNYEYYVLDRPSVTDAEYDRLMQELIALEEQYPALKTKDSPSQRV
GGQALDAFQKVEHRVPMLSLANAFNEGDLRDFDRRVRQEVGEVAYVCELKIDGLAVSVRY
EDGFFIQGATRGDGVTGEDITENLKTIRSLPLKLKHPLTLEARGEAYMPKRSFERLNEER
AARGEEVFANPRNAAAGSLRQLDPKIAASRHLDMFVYALVNAEELGIHSHSEALDYLQQL
GFKTNPERRRCATIEEVIEFVNSWQKKRPHLPYDIDGIVIKVDSFEQQKQLGATAKSPRW
AIAYKFPAEEAVTKLIGIELSVGRTGVVTPTAILEPVRIAGTVVQRASLHNEDLIRAKGI
MIGDVVVVKKAGDIIPEVVSALPERRTGSEQPFCMPTHCPECGSALVRLDGEVALRCLNP
KCPAQIREGLIHFVSRQAMNIDGLGEKVVAQLFQAGLVRDVADLYALTKEQLLALERMGE
KSATNLLQAIEASKQNSLERLLFGLGIRHVGAKAAKILAEQFETMERLQAATKEELTAIH
EIGEKMGDSIVTYFAKQEVKELLDELRSYGVNMTYKGQKASAAIHTSPFAGKTIVLTGKL
ETLSRNEAKEKIEQLGGNVTNSVSKNTDLVIAGVDAGSKLTKAKQLGIEVWDEARFLQEM
ERQVSTT
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggaacggatagaggaattgcgccgcttgttaaatcaatataactacgaatat
tacgtactcgatcgtccgtcggtaacggatgcggaatatgaccgattgatgcaagaacta
attgcgttagaagagcaatatccagcgcttaaaacgaaagactctccttctcagcgcgtt
ggtggacaagcgctagacgcttttcaaaaagtcgaacatcgcgtgccgatgctaagcctt
gcgaacgcgtttaacgaaggggatttgcgcgattttgaccgccgtgtccgccaagaagta
ggcgaggtcgcatatgtttgcgaactaaaaatagacggattagctgtttcggttcggtat
gaagatggcttctttattcaaggagcaacgcgcggcgacggtgttacgggagaagacatt
acggaaaatttaaaaacgattcgttcgcttccgctaaagcttaaacacccgttgacatta
gaagcgcgcggggaggcgtatatgccgaagcggtcatttgaacgattaaatgaagagcgg
gcagctcgcggcgaagaagtatttgctaatcctcgcaacgcggcagcgggttctttgcgg
cagctagacccgaaaatagcggcatcccgccatttagatatgtttgtatacgcgttagtg
aatgctgaagaacttggaattcactcacatagcgaagcgcttgattatttgcagcagctc
ggctttaaaacaaatccagagcgccgtcgctgtgcaacgatagaagaagtaatagaattt
gttaacagctggcaaaaaaaacgcccccatcttccttatgatattgacggcattgtcatt
aaagtggattcgttcgaacagcaaaaacagctcggggcaacagcgaaaagcccgcgttgg
gcgattgcttataagtttccagccgaagaagcagtcacgaaattaatcggcattgaatta
agtgtcgggcggacaggggtagtgacgccgacggcgattttagagccggttcgcattgcc
ggaacggttgttcagcgcgcctcgcttcataacgaagatttaattcgcgcaaaaggcatt
atgattggcgatgttgtcgtcgtcaaaaaagcaggtgacattattccagaagtcgtcagc
gcgttgccagaacggcgcacaggaagcgagcaaccgttttgcatgccgacgcattgccca
gaatgcggtagcgcgctcgttcggttagacggggaagtcgcgctgcgctgtttaaacccg
aaatgtccggcgcaaattcgcgaagggctaattcatttcgtatcgcgccaagcaatgaac
attgacgggcttggggaaaaagttgttgcccagttgttccaagccgggcttgttcgcgat
gtcgctgatttatatgcgttaacgaaagagcagttgctagcgttagagcgaatgggagaa
aaatccgccacgaatttgctgcaagcaattgaggcatcgaaacaaaattcgttagaacgc
ctcttgtttgggcttgggattcgtcatgtcggggcaaaagcggcaaaaattttagcagaa
cagtttgaaacgatggaacggctacaagcagcaacgaaagaagaactgaccgctattcat
gaaattggtgaaaaaatgggggattccattgttacgtattttgccaaacaagaagtgaaa
gagctgctagatgaattgcgttcttacggcgtcaacatgacctataaagggcagaaagca
agcgcggctattcacacgtctccttttgcagggaaaacaattgtattaactggaaaactc
gaaacgttatcgcgcaacgaagcgaaagagaaaattgaacagcttggcggcaatgtgacg
aacagcgtcagcaaaaataccgatttagtcattgcaggagtagatgcggggtcgaaattg
acgaaagcgaagcaactcggcattgaggtttgggacgaggcgcgttttcttcaagaaatg
gaacggcaggtgtcaacaacatga
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