Aggregatibacter actinomycetemcomitans D7S-1: D7S_01836
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Entry
D7S_01836 CDS
T02046
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aan
Aggregatibacter actinomycetemcomitans D7S-1
Pathway
aan03030
DNA replication
aan03410
Base excision repair
aan03420
Nucleotide excision repair
aan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D7S_01836 (ligA)
03410 Base excision repair
D7S_01836 (ligA)
03420 Nucleotide excision repair
D7S_01836 (ligA)
03430 Mismatch repair
D7S_01836 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aan03032
]
D7S_01836 (ligA)
03400 DNA repair and recombination proteins [BR:
aan03400
]
D7S_01836 (ligA)
Enzymes [BR:
aan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D7S_01836 (ligA)
DNA replication proteins [BR:
aan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D7S_01836 (ligA)
DNA repair and recombination proteins [BR:
aan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D7S_01836 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D7S_01836 (ligA)
MMR (mismatch excision repair)
DNA ligase
D7S_01836 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D7S_01836 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
HHH_3
BRCT_2
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AFI87563
LinkDB
All DBs
Position
complement(1715133..1717148)
Genome browser
AA seq
671 aa
AA seq
DB search
MTTSIQQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTADSPT
QRVGARPLSEFAQIRHEIPMLSLDNAFSNEEFFAFVKRIQDRLALVPEPLTFCCEPKLDG
LAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPH
AGFERLNERALQHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVELPPT
HFERLQWLKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQQ
RLGFISKAPRWAIAYKFPAQEELTELNEVEFQVGRTGAITPVAKLKPVFVAGVTVSNATL
HNGDEIERLNIAIGDTVIIRRAGDVIPQIIGVVHDRRPADARQIVFPTECPVCGSLIVRI
EGEAVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD
LTTLSRLERMGPKSAENALTSLEKAKNTTLARFIFALGIRDVGEATALNLANHFKTLEAL
QNADLEQLQQVPDVGEVVANRIFVFWHEAHNVAVVEDLIAQGVHWETVDVQEVKENPFKG
KTVVLTGTLSQMGRNDAKALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVL
SEEEFLGWING
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgacaacctcaattcaacaacaaatcgacgaccttagaaaaaccttacgccaccacgaa
tatcaataccacgttttagacgatccgcagattcccgacagcgaatacgatcggctgttt
catcagcttaaagcgctggaacaacaacatcccgaactggttaccgccgattcgccgact
caacgtgttggcgcgcgtccgttgtccgaatttgcacaaattcgccatgaaattcccatg
ctgtccttggataacgccttttccaatgaggaatttttcgccttcgtcaaacgcattcag
gatcgcctggcactcgtgccggaaccgctgaccttttgctgcgaaccgaaactggacggt
ttagccgtcagcattttgtacgtgaacggcgtattgacccaagcggcaacccgtggcgac
ggaactaccggcgaagacatcacgcaaaatatccgcaccattcgtaacatcccgttgcaa
ctgctgacggataatccgccggcgcgtttggaagtgcgcggcgaggtgttcatgccgcac
gcgggctttgagcgattaaatgaacgcgcattgcaacacggcgaaaaaacctttgccaat
ccgcgcaatgcggcggcgggctcactacgtcaattggatccgaaaatcaccagccagcgc
ccgttaatgctcaatgcgtatagtatcggcattgccgaaggcgtggaattgccgccgacc
cattttgaacgcctgcaatggctgaaatccgtgggtattccggtaaacaatgaaattcag
ttgtgcgacggcattgaaaacgtgttgaatttctaccgcactattatggcgaaacgcagt
tccctcggttatgacatcgacggcgcggtgctgaaaatcaacgatattgcgctgcaacaa
cgcctcggttttatttccaaagcgccgcgttgggcaattgcctataaattcccggcgcaa
gaagagctgaccgaactcaatgaggtggagttccaagtaggacgcaccggggcgattacg
ccggttgctaagctaaaaccggttttcgtggctggcgtaacggtaagcaacgcaacccta
cacaacggcgacgagatcgagcgtctcaacattgccatcggcgacactgtgattatccgt
cgcgcaggcgatgttattccgcaaattatcggcgtggtgcatgatcgccgcccggcggat
gcgcgccaaattgtttttccgaccgagtgcccggtgtgcggttctttaattgttcgcatt
gaaggcgaagccgtcgcacgctgtaccggcggattattctgcgcggcgcaacgcaaagaa
gcgttaaaacactttgtgtcacgcaaagccatggacatcgacggtgtgggcggcaagctc
attgaacagctggtggatcgcgaattgattcataccccggcagatttgtttaaattagac
ttaaccactctctcccgccttgagcgaatgggaccgaaatccgccgaaaatgccttaacc
agcttagaaaaggcgaaaaacaccaccctcgcccgcttcattttcgccttgggcattcgt
gatgtaggcgaagccaccgcgttaaatctggcaaaccatttcaaaaccttggaagccctg
caaaatgccgatttggaacagttgcaacaggtgcccgacgtaggcgaagtggtagcgaat
cggatttttgtgttctggcatgaagcgcataatgtcgccgtggtggaagatctcatcgcc
caaggcgtgcattgggaaaccgttgacgtgcaggaagtgaaggaaaatccgttcaaaggc
aaaaccgtggtgctcaccggcaccctctcgcaaatggggcgcaacgacgccaaagcctta
ttacaacaactcggcgccaaagtcagcggcagtgtttccgccaaaaccgactatgttatc
gccggtgaagccgccggctcaaaactaagcaaagcggcggagttaggggtgcaggtgttg
agtgaggaggaatttttgggctggatcaacggataa
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integrated database retrieval system
