Halarcobacter anaerophilus: AANAER_1354
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Entry
AANAER_1354 CDS
T06853
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aana
Halarcobacter anaerophilus
Pathway
aana03030
DNA replication
aana03410
Base excision repair
aana03420
Nucleotide excision repair
aana03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AANAER_1354 (ligA)
03410 Base excision repair
AANAER_1354 (ligA)
03420 Nucleotide excision repair
AANAER_1354 (ligA)
03430 Mismatch repair
AANAER_1354 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aana03032
]
AANAER_1354 (ligA)
03400 DNA repair and recombination proteins [BR:
aana03400
]
AANAER_1354 (ligA)
Enzymes [BR:
aana01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AANAER_1354 (ligA)
DNA replication proteins [BR:
aana03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AANAER_1354 (ligA)
DNA repair and recombination proteins [BR:
aana03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AANAER_1354 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AANAER_1354 (ligA)
MMR (mismatch excision repair)
DNA ligase
AANAER_1354 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AANAER_1354 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
PTCB-BRCT
HHH_2
HHH
HHH_5
Nlig-Ia
DNA_ligase_ZBD
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
QDF28837
LinkDB
All DBs
Position
complement(1388059..1390005)
Genome browser
AA seq
648 aa
AA seq
DB search
MTQTEYNEKIETLIKWAKAYYVYDNPVATDEEYDKLARECLAYEQQNPNKSHPNSPNKRV
GGFTLEGFEKANHLSRMWSQEDVFNTKELEDWIKRASKVNTNLEFYCEPKFDGASLNLIY
ENGLLKQGITRGDGNIGEDVTNNVKTIFSIPLQIEEKSLIEIRGEIVIRKKDFEKINQER
LQKGEALFANPRNAASGSLRQLDPAITAKRKLFFNVWGVGQNSLDMKKHSKMMDYVYSLG
FVKPPMQTIAKSVEEIEEIYYKIIEARDNFEMMLDGMVIKIDDREIQEELGYTVKFPKWS
CAYKFPAVEKTTKVKDIVLQVGRTGVITPVAVVEPTLIEGSTVERATLHNFDEIQRLDLR
LNDEVIIIKSGDIIPKITKVFYDRRDESQVEIKRPTSCPTCHSEVLDEGTMIKCQNLDCP
SRVVNSIIYFASKNCMNIDGLGNKIVELLVKEKIIHDILDLYSLKYEDLAPLEGFKEKKI
NNLLNAIENTKGTQLHRVINALGIEHIGEVASKQICLEFGLNVINIDYDSLVSLDGIGEQ
MANSFCEFMRVNKELVLKLVDIIKPTVEEKKEVVENAFKGKTVVLTGTMSKSRGLIKKEL
EELGAKVSSSVSKKTDYVIYGEEAGSKYDKAVELGVTTLTQEEMEGLF
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaactgaatataacgaaaaaattgaaactttaattaaatgggcaaaagcctat
tatgtatatgataaccctgtagcaacagatgaagagtatgataaattagcaagagagtgt
ttggcatacgaacaacaaaatccaaataaaagccatccaaattcaccaaataaaagagtc
ggcggttttactttggaaggttttgaaaaagcaaaccatttaagcagaatgtggtctcaa
gaagatgtatttaatacaaaagagttggaagattggataaaaagagcctcaaaagtaaat
acaaatttagaattttattgtgaaccgaaatttgacggagcaagtctgaatcttatttat
gaaaacggtttgttaaaacaaggaattacaagaggagacggaaacataggagaagacgta
accaataacgtaaaaacaatcttctctattcctttgcaaatagaagagaaatctttaatt
gaaattcgcggtgaaatagttatcagaaaaaaagattttgaaaaaataaatcaagagaga
ctacaaaaaggcgaagcactttttgcaaatccaagaaatgctgcttctggaagtttaaga
caacttgaccctgcaattacggcaaaaagaaaactttttttcaatgtctggggagtggga
caaaactcattggatatgaaaaaacacagtaaaatgatggattacgtttactctttaggt
tttgtaaaaccgccaatgcaaaccattgcaaaatcagttgaagagattgaagagatttat
tacaaaattattgaagcaagagataattttgaaatgatgttagacggaatggttataaaa
atagatgacagagagatacaagaagagcttggatacactgtcaaatttccaaaatggtca
tgtgcctacaaatttccggcagttgaaaaaacaacaaaagtaaaagatatagttttacaa
gtaggaagaacaggtgttattactcctgttgccgttgttgaacctaccttaatagaaggt
tcaaccgtagaaagagcaaccttacacaattttgatgaaattcaaagacttgatctaaga
ttaaatgatgaagttattattataaaaagcggtgatattatcccaaaaatcacaaaagtt
ttttatgatagaagagatgagagtcaagttgagataaaacgccctacttcttgtcctacc
tgccacagcgaagttttagatgaaggcacaatgataaaatgccaaaacttggattgtcca
agccgtgtggttaattcaataatctattttgcatctaaaaactgtatgaatatagacggc
ttgggaaataaaatagtcgaacttttggtaaaagaaaaaatcattcacgatatattggat
ttatactctttaaaatatgaagatttagcaccgcttgaaggctttaaagagaaaaaaatc
aataatcttcttaatgcaatagaaaatacaaaaggaacacagcttcacagagttataaat
gctttaggtattgaacatataggagaagttgcttcaaaacaaatttgcctggaatttgga
ttaaatgtcataaacattgattatgattctttagtctctttagacggtatcggggagcaa
atggcaaactctttttgtgagtttatgagagtaaataaagagcttgttttaaaacttgta
gatattattaaacccacagttgaagagaaaaaagaggtcgtagaaaatgcttttaaaggt
aaaaccgtagttttaacgggaactatgagcaaaagcagaggtttgataaaaaaagagctt
gaagagcttggagcaaaagtaagctcttctgtatcgaaaaaaacagattatgtaatttac
ggagaagaagcaggaagtaaatatgacaaagctgttgaacttggagttacgactttaact
caagaagagatggaagggctgttttaa
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