Aquirufa antheringensis: G9X63_10195
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Entry
G9X63_10195 CDS
T08298
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aanh
Aquirufa antheringensis
Pathway
aanh03030
DNA replication
aanh03410
Base excision repair
aanh03420
Nucleotide excision repair
aanh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aanh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G9X63_10195 (ligA)
03410 Base excision repair
G9X63_10195 (ligA)
03420 Nucleotide excision repair
G9X63_10195 (ligA)
03430 Mismatch repair
G9X63_10195 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aanh03032
]
G9X63_10195 (ligA)
03400 DNA repair and recombination proteins [BR:
aanh03400
]
G9X63_10195 (ligA)
Enzymes [BR:
aanh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G9X63_10195 (ligA)
DNA replication proteins [BR:
aanh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G9X63_10195 (ligA)
DNA repair and recombination proteins [BR:
aanh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G9X63_10195 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G9X63_10195 (ligA)
MMR (mismatch excision repair)
DNA ligase
G9X63_10195 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G9X63_10195 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
USQ04466
LinkDB
All DBs
Position
complement(2260844..2262841)
Genome browser
AA seq
665 aa
AA seq
DB search
MDINQRMNELIEKINLYNEAYYQQNESIISDQAFDLLLAELIKLEQENPLFARSDSPTQK
VGGTITKEFKSVTHQFPMLSLGNTYNETDLRDFDERVKKGLEGEDFEYVCELKFDGVALS
FWYTNGVLQKGVTRGDGTRGDDITANVKTIKSLPIRVSSTILPSTYEIRGEGYMPITSFD
RINAEKIAKGDQPLANPRNAASGTFKMQDSAEVARREMECFIYSYLGNENPFNSHSEALE
HLKSVGFSISPTYRVCASIDEVLTYIEDWTEKRNDLPLNTDGIVIKVNDFGQQERLGFTA
KSPRWAIAFKYPSEIARTRINSVSYQVGRTGNVTPVANLEPVYLAGTVIKRASIHNANEM
ERLDLREGDTVFIEKGGEIIPKITGVDTSARKEGNAFVFPHACPSCSTELVRLEGEANHY
CPNDTGCPPQIKGKIEHFIARKALNIENLGTETVDLLFEKGIVQNVADLYDLNADKFIGL
EGFQSKSIQNILFSIEKSKQIPFRQVLFGLGIRHVGATIAEKLVLHFHSLENLMQASLED
LIAVPEIGDRIALSVLEYFAASENKDIIERLKRAGVQFSEEISEIVLETTALDGKTFVIS
GVFSHFDRDGLKAKIIANGGKVVSSISAKLDYLVAGENMGPAKLEKANSLSIPIISEDEF
IALLS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatataaatcagcggatgaatgaactcattgagaagatcaatctctacaatgaggcc
tattatcaacagaatgaaagcattatttcggatcaagcattcgatctattactcgctgaa
ttaatcaaattagagcaagaaaatcctctttttgcacgttctgatagccccactcaaaaa
gtaggcggcaccatcacgaaagaattcaaatccgtcactcaccaatttccgatgttatcc
ttaggaaatacttacaatgaaaccgacttgagggattttgatgaacgggtaaaaaaaggg
ttagaaggagaggacttcgaatatgtgtgtgagttaaagtttgacggagtggccttatcg
ttttggtataccaatggagtattacaaaaaggggtaacaagaggagatggaacgcgaggg
gatgatattacggcgaatgtaaagaccatcaagagtctgcccatccgtgtcagttccacc
attctacccagtacctatgagattcgaggagaggggtatatgcctatcacttcgtttgat
cgtatcaatgcggagaaaattgcaaaaggagatcaacccctagctaatccacgaaatgct
gcatctggcacctttaaaatgcaggattcagcagaggtagctagaagagaaatggaatgt
tttatctattcctatttaggcaatgagaacccatttaatagccattccgaggcattagaa
cacttgaaatcggtcggttttagtatttcccctacgtaccgtgtttgcgcatccattgat
gaggtgttaacctatatcgaggattggacagagaaaagaaatgatttacccttgaataca
gatggaattgtgatcaaggtcaatgattttggacaacaggaacgtttaggttttacggcc
aaatcacctcgttgggccatcgccttcaaatacccctcagaaattgcccgaacacgtatc
aactctgtatcttatcaggtaggaaggacaggtaatgtgacacctgtagccaatttagaa
cctgtttacctggctggtaccgttattaaacgtgcctccattcacaatgcgaatgaaatg
gaacgcctcgatttacgcgagggagataccgtattcattgaaaaagggggagagatcatt
cctaaaatcactggagtggatacttcagccagaaaagagggaaatgcttttgtgtttccg
catgcatgcccatcttgttcaacagaacttgttcgcttagaaggcgaagccaatcactat
tgtccaaacgataccggctgtccgccgcaaatcaaagggaaaatcgaacattttattgct
cgtaaagccctgaacattgaaaacctcggaactgaaacggtcgacttattattcgaaaaa
gggatcgttcaaaatgtggctgacctgtatgatttaaatgcagataaattcatcggttta
gagggatttcagtctaaatcgatacaaaacatactttttagtatagaaaaatcaaagcaa
atcccgttccgccaagtattatttggattagggattcggcatgtaggagccaccatcgcg
gagaaactagttttgcattttcattccctagagaatttgatgcaggctagcctagaagat
ttaatcgcggttcctgagataggggatcggattgcgctcagtgtactggaatactttgcg
gcttccgaaaataaggacatcatcgagcgtcttaagagggcaggagttcaattttcagaa
gaaataagcgaaatagttttagaaacaacggctttggacggcaaaactttcgtaatttcg
ggagtatttagccatttcgatcgagatggattaaaggcaaaaatcatcgcaaacggcgga
aaagtcgtttccagtatttctgccaaattagattacctagtcgccggtgaaaatatgggg
cctgctaaactagaaaaagcaaattcattatccataccaattatctcggaggacgagttt
attgccctcctttcttaa
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