Arenibacter antarcticus: KCTC52924_03962
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Entry
KCTC52924_03962 CDS
T10841
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aanr Arenibacter antarcticus
Pathway
aanr03030
DNA replication
aanr03410
Base excision repair
aanr03420
Nucleotide excision repair
aanr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aanr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KCTC52924_03962 (ligA)
03410 Base excision repair
KCTC52924_03962 (ligA)
03420 Nucleotide excision repair
KCTC52924_03962 (ligA)
03430 Mismatch repair
KCTC52924_03962 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aanr03032
]
KCTC52924_03962 (ligA)
03400 DNA repair and recombination proteins [BR:
aanr03400
]
KCTC52924_03962 (ligA)
Enzymes [BR:
aanr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KCTC52924_03962 (ligA)
DNA replication proteins [BR:
aanr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KCTC52924_03962 (ligA)
DNA repair and recombination proteins [BR:
aanr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KCTC52924_03962 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KCTC52924_03962 (ligA)
MMR (mismatch excision repair)
DNA ligase
KCTC52924_03962 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KCTC52924_03962 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HNOB
HHH
Zn_Ribbon_TF
DNA_ligase_A_M
CoV_NSP2_N
Motif
Other DBs
NCBI-ProteinID:
XHP76193
LinkDB
All DBs
Position
complement(4686286..4688280)
Genome browser
AA seq
664 aa
AA seq
DB search
MEIKQQIEKLRRELHQHNYNYYVLDNATITDYDFDMKLKELQALEDRHPEYNDSNSPTLR
VGGAITKNFETLAHERRMYSLDNSYSKEDLEDWEKRIQKILGDVTVEFTCELKYDGASIS
LTYENGNLVRGLTRGDGFQGDDVTNNVKTIRSIPLQLQGDYPLKFDIRGEIVLPFEGFAQ
MNRERIENGEEPYMNPRNTAAGSLKLQDSALVAERPLDCLLYSIVGTDLGLESQFQMLEK
ARNWGFKVPTVAKLCKNTDEVLQFVEYWDVHRHQLPYETDGVVVKVNSIQYQEELGYTSK
SPRWAMAYKFKAEQVSTVLNEISYQVGRTGAITPVANLEPVLLAGTTVKRASLHNADQIE
KLDIRVGDTVFVEKGGEIIPKIIGVDFTQRPITSQPTIYIDRCPECGTQLERNEGDAKHY
CPNEYGCPPQITGRIQHFISRKAMDIEGLGGETVELLFREGLIRNYADLYGLTKEQLLPL
ERMAEKSAENLIKGVADSVNIPFERVLFALGIRFVGETVAKKLAKAYKSIEALQHTTVEE
LMQVDEIGQRIAESVVNFFQNEINLEIISRLKVEGVQLEVSADKLLNQTDLFNGKTFVVS
GVFENVSRDELKKLIEDNGGKVGSSISSKTSYLVAGDNMGPSKRTKAESLGVPIISETDF
IGML
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggagattaaacagcaaatagaaaaactgcgaagagaattacatcagcataattataat
tattatgtgttggacaatgctaccataaccgactatgattttgatatgaaattgaaggag
ttgcaggcgttggaggataggcaccccgaatataacgactccaattccccaaccttaagg
gtaggaggcgccattactaagaattttgaaacgttggcacacgaacgtcgaatgtattct
ttggacaattcctattccaaggaagatttggaagactgggaaaaaaggatccaaaaaata
ttgggtgatgtaacggtggaattcacctgtgaacttaaatacgatggtgcctccatcagt
cttacctatgaaaatggaaatttggttaggggcctaacaaggggagatggatttcagggg
gatgatgttaccaacaatgttaagaccatcagatcaataccattacagttgcagggggat
tatccactgaaattcgacattcggggagaaatagtgttaccctttgaaggctttgcccaa
atgaatagagagcggatcgaaaacggagaggagccctatatgaatccgagaaataccgct
gcggggagtttaaaattgcaggatagcgcattggtagcagaacgacctttggattgcctt
ttatacagtattgtggggactgacctaggattggaatcacaattccaaatgttagaaaaa
gcaaggaactggggatttaaagtcccaacagtagccaagctttgtaaaaacaccgatgaa
gtacttcaattcgtggagtattgggatgtgcacaggcaccaactcccttatgaaacagat
ggagttgtggttaaggtaaacagtattcaataccaagaagaactgggctatacttccaaa
tcaccaagatgggcaatggcctataaatttaaggcagaacaggtttcaactgttttgaat
gagatttcctatcaggttggtcgtacaggagccattacaccagtagctaatcttgagccc
gttttattagcaggtactacagtaaaacgcgcctcattgcacaatgcagaccaaattgaa
aagctagatatcagagtaggagataccgtttttgtagaaaagggaggagaaatcatccca
aaaataataggggtcgattttactcaaagacctataacgtcccaacctacaatttatatt
gaccgatgcccggaatgtggaacacaattggaacgcaacgaaggggatgccaagcattat
tgtcccaacgaatatgggtgtccaccccagattacaggtcgtatacagcattttatttcc
cgtaaggccatggatattgaagggttgggtggtgaaacagtggagttgctttttagggag
ggtctgatccggaattatgccgatctgtatggcttaactaaggaacagttgttaccctta
gagcgaatggcagaaaaatcggcagagaatttaataaagggagtcgcagattctgtcaat
attccatttgaacgggtgttgtttgctctggggatcaggtttgttggggaaaccgtcgct
aaaaaattagcaaaagcctataagagtatagaagcactgcagcacaccacggtagaggaa
ttgatgcaagtggacgaaattggacaacgtattgcagagagtgtagttaatttttttcaa
aacgaaatcaatttggagattatttcgagactaaaggtggagggagtacaacttgaggtc
tcagcagacaaacttctcaaccagacagacctctttaatgggaagacttttgtagtctct
ggagtttttgaaaatgtaagtagggatgagcttaagaaattaattgaggataacggaggc
aaggtaggttccagtatttcttcaaaaacttcttatcttgttgcgggagacaatatggga
cccagtaaacgaaccaaggccgaaagtttgggagtacccattatttcggagaccgatttc
ataggcatgctataa
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integrated database retrieval system
