Arsenophonus apicola aApi_AU: QG404_05965
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Entry
QG404_05965 CDS
T09031
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aapc
Arsenophonus apicola aApi_AU
Pathway
aapc03030
DNA replication
aapc03410
Base excision repair
aapc03420
Nucleotide excision repair
aapc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aapc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QG404_05965 (ligA)
03410 Base excision repair
QG404_05965 (ligA)
03420 Nucleotide excision repair
QG404_05965 (ligA)
03430 Mismatch repair
QG404_05965 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aapc03032
]
QG404_05965 (ligA)
03400 DNA repair and recombination proteins [BR:
aapc03400
]
QG404_05965 (ligA)
Enzymes [BR:
aapc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QG404_05965 (ligA)
DNA replication proteins [BR:
aapc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QG404_05965 (ligA)
DNA repair and recombination proteins [BR:
aapc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QG404_05965 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QG404_05965 (ligA)
MMR (mismatch excision repair)
DNA ligase
QG404_05965 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QG404_05965 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
WGO84434
LinkDB
All DBs
Position
1076926..1078938
Genome browser
AA seq
670 aa
AA seq
DB search
MKEQQNYLARLKQQLRHHEYLYHVLDTPEIPDAEYDRMMQELKKIEAEHPEWITADSPTQ
RIGAAPLTAFEQVRHEIPMLSLDNVFDEESYLAFDKRVHDRLKNNSQLTFCCELKLDGLA
VSLLYEQGELVQAATRGDGTTGENITANIRTIRAIPLRLTGDNIPERIEIRGEVFMTHRG
FEKLNEEARRNDGKIFANPRNAAAGSLRQLDPRITAKRPLSFFCYGFGLLAGGQLPASQY
QCLMQFKKWGLPVSDKIALCQNSQQVLAYYHQIEHERLGLGFDIDGVVIKVDPLQLQEQL
GFVARAPRWATAFKFPAQEQITLLHDVEFQVGRTGAITPVARLEPVQVAGVTVSNATLHN
ADEIERLGVHIGDTVVIRRAGDVIPQIVNVLADRRPIDSREIRFPIHCPVCGSAIERIEG
EAVIRCTGGLICAAQRKGALKHFVSRRAMDIEGMGDKIIDQLVDKEYVTTAADLYRLNLD
ILARLERMGPKSAQNLINALDKSKQTTLARFIYALGIREVGEATASNLAAHYTRLTSLMA
ADIESLKKVQDVGEIVAKHIVNFFREQHNRDVVNQLMNDIGISWPAMPAKKTNSAFTGKT
IVLTGTLNRLTRDELKDKLILLGAKVTGSVSKKTDLVIAGEAAGSKLAKANELGIRTINE
DELIALLEDH
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacaacaaaattatcttgcacggcttaaacagcaattacggcatcatgaatat
ctttatcatgtattagatacgcctgaaatacctgatgcagaatatgatcggatgatgcag
gagttgaaaaaaatagaggctgagcatccagaatggatcacggctgattcgccaacacaa
cgaattggtgctgcgccattaacggcttttgagcaggtacgccatgaaataccgatgctg
tctctagataacgtttttgatgaagagagttatttagcttttgataaacgagtgcatgat
cgtttaaaaaataatagtcagttgacattttgttgtgagcttaaattagatggtttagcg
gttagcttgttatatgaacagggtgaactggtacaagcagctacgcggggtgatggtacc
accggcgaaaatattactgctaatattcgtactattcgagcaattccgctgcgtttaact
ggcgataatattcctgagcggattgaaattcgcggtgaagtttttatgactcatcggggt
tttgaaaaactgaatgaagaagctcggcgtaatgatggtaaaatttttgccaatccacgt
aatgctgcggcaggctcattacgtcagctagatccccgtattactgctaaaaggcccttg
tcctttttttgttatggttttggccttctggcgggtgggcaattgcctgctagccaatat
caatgtctaatgcagtttaaaaaatggggattacccgttagtgataagatagcgctttgc
caaaatagccaacaagttttagcctattatcaccaaattgagcatgaacgtttaggctta
ggttttgatatcgatggtgtcgttataaaagtggatcccttgcaattgcaagaacagctc
ggttttgttgcccgtgcgccgcgttgggcgacagcatttaaatttccagctcaagaacag
atcactttattacatgatgttgaatttcaagtggggcgtaccggtgctattacgccagta
gctcgattagagcctgttcaggttgcaggtgttactgtaagtaatgcaacattacataat
gctgatgagatagaacgattaggcgtacacattggggataccgtcgttattcgccgagcg
ggtgatgtgatcccgcaaattgttaatgtactcgctgatcgtcgtcctattgatagccga
gaaattcggtttcctattcactgtccggtttgtggttcagccattgagcggattgaaggt
gaggcggtgatccgttgtactggcggtttaatttgtgcggcacaacgtaaaggcgcctta
aagcactttgtttcacgccgagcaatggatattgagggcatgggtgataagattattgat
caattggttgataaagagtatgtaacgacagcggctgatctttaccgtctaaatctggat
attttagccagattagagcgtatggggccaaagtcggcacaaaacttaattaatgcactt
gataaatccaaacaaaccacattagcccgctttatttatgcgttgggtattcgggaggtt
ggagaagcaacggcaagcaatttggcggcccattataccaggttaacttctcttatggct
gccgatatagagtcgctcaaaaaggttcaagatgttggcgagatagtggcgaagcatatt
gttaatttttttcgcgaacagcataaccgggatgttgttaatcaattaatgaatgacatt
ggtattagctggccagccatgccggctaagaaaaccaatagtgcattcactggtaaaaca
atagttttaaccggtacattaaatcgtttaacgcgtgatgagctaaaagataaattaata
ttacttggcgcaaaagtcacgggcagtgtttctaaaaaaaccgatctagtgattgcaggt
gaggccgctggttctaaattggccaaggccaatgagttaggaataagaactattaatgag
gatgaattaatagcgttactcgaagatcattaa
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