Arcobacter aquimarinus: AAQM_1162
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Entry
AAQM_1162 CDS
T06604
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aaqi
Arcobacter aquimarinus
Pathway
aaqi03030
DNA replication
aaqi03410
Base excision repair
aaqi03420
Nucleotide excision repair
aaqi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aaqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AAQM_1162 (ligA)
03410 Base excision repair
AAQM_1162 (ligA)
03420 Nucleotide excision repair
AAQM_1162 (ligA)
03430 Mismatch repair
AAQM_1162 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aaqi03032
]
AAQM_1162 (ligA)
03400 DNA repair and recombination proteins [BR:
aaqi03400
]
AAQM_1162 (ligA)
Enzymes [BR:
aaqi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AAQM_1162 (ligA)
DNA replication proteins [BR:
aaqi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AAQM_1162 (ligA)
DNA repair and recombination proteins [BR:
aaqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AAQM_1162 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AAQM_1162 (ligA)
MMR (mismatch excision repair)
DNA ligase
AAQM_1162 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AAQM_1162 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
Nlig-Ia
BRCT_2
HHH_5
DNA_ligase_ZBD
HHH
Motif
Other DBs
NCBI-ProteinID:
QKE25915
UniProt:
A0AAE7E0T6
LinkDB
All DBs
Position
complement(1179275..1181224)
Genome browser
AA seq
649 aa
AA seq
DB search
MTKNEYDLNIKKLISWAKAYYVFDNPIATDEEYDKLARDCLAFESENPELSHPNSPNKRV
GGFVLDGFEKASHLSRMWSQEDVFNTKELEDWIKRASKVNTNLEFFCQPKFDGASLNLIY
ENGVLKQAITRGDGSIGEDVTNNVKTIHSIPLEIAEKSLIEIRGEIVIKKADFEKINEER
LKNNEQVFANPRNAAAGSLRQLDPKITAKRKLFFNVWGIGLNTLNYKKYSDLMEYIYSLG
FVKPPMQTLTSNVEGIEKLYHEIIKVRDEIEMMLDGMVVKINDIETQDELGYTVKFPRWS
CAYKFPALEKTTKIKDIILQVGRTGVITPVAVVEPTDIEGVVVERASLHNFDEIARKDIR
INDEVIIIRSGDVIPKITKVFIDRRDGTQKEIFRPTSCPDCNSELLDEGTLIKCQNLDCP
SRVVNSIIYFASKNCMNIDGLGNKIVETLVKEKKIYDILDLYSLKYEDLENLEGFKEKKI
NNLLNAIENTKGTELHRIINALGIEHIGEVASKQICLEFGLEVINIDYDSLVNLDGIGEQ
MANSFTEFMRVNKELVKKLVSIINPKVEEKIEVSENPFKGKTVVITGTMSVSRGEIKKML
ESLGAKVSSSVSKKTDYLIYGEDAGSKYDKAIELNVPTLNENEMNSIIL
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaaatgaatatgatttaaatataaaaaaactaatatcttgggcaaaagcatat
tatgtatttgataatccaatagcaactgatgaagagtatgataaattagcaagagattgt
ttagcttttgagagtgaaaatccagaactatcacatcctaattctccaaataaaagagta
ggaggatttgttcttgatggtttcgaaaaagcatctcatctttctcgtatgtggtcacaa
gaagatgtttttaacacaaaagagttagaagattggataaaaagagcatcaaaagtaaat
acaaatttagagtttttttgccaaccaaaatttgatggtgcttccctaaatcttatttat
gaaaatggtgttttaaaacaagcaataacaagaggtgatggaagtattggagaagatgtt
acaaataatgttaaaactattcactctattccacttgaaatagctgaaaaatctttgatt
gaaataagaggtgaaatcgtaatcaaaaaagctgattttgaaaaaataaatgaagaaaga
ttaaaaaataacgaacaagtttttgcaaatccaagaaatgcagcagcaggaagtctacga
caactcgatccaaaaatcacagcaaaaagaaaactatttttcaatgtttggggaattggt
ttaaatacacttaattataaaaaatattcggatttaatggaatatatttactctttagga
tttgtaaaaccacctatgcaaactcttacttcaaatgttgaaggaattgaaaaactttac
catgaaatcataaaagtaagagatgaaatcgaaatgatgcttgatggaatggttgtaaaa
ataaatgatatagaaactcaagatgaattaggttacacagtgaaatttccaagatggtca
tgtgcttataaatttccagctttggaaaaaacaacaaaaatcaaagatattattttacaa
gttggaagaactggcgttataactcctgttgctgttgtagaaccaacagatattgaagga
gttgtagtagaacgtgcaagtcttcataattttgatgaaattgcaagaaaagatataaga
ataaatgatgaagtaattatcataagaagtggagatgttattccaaaaattacaaaagtt
tttatagatagaagagatggaacacaaaaagagatttttcgccctacttcttgtcctgat
tgtaatagcgaacttttagatgaaggaacgcttataaaatgtcaaaaccttgattgtccc
tcaagagttgtaaactctataatttattttgctagtaaaaattgtatgaatatcgatgga
cttggaaataaaatagttgaaacattagtaaaagaaaaaaagatttatgatattttagat
ttatactctttaaaatatgaagatttagaaaatcttgaaggatttaaagaaaaaaaaata
aataatcttttaaatgctatagaaaatacaaaaggaacagaacttcatagaatcataaat
gctttaggaattgaacatattggagaagttgcttcaaaacaaatctgtttagagtttgga
ttagaggttataaatattgattacgattctttggttaatcttgatggaattggtgaacag
atggcaaactcttttactgaatttatgagagtaaataaagagttagtaaaaaaacttgta
tctataatcaacccaaaagttgaagaaaaaattgaagtaagtgaaaatccttttaaaggt
aaaacagtagttataacaggaactatgagtgttagtagaggagaaataaaaaaaatgctt
gaatcacttggtgcaaaagtctcttcaagtgtatctaaaaaaacagattatttaatttat
ggtgaagatgcaggaagcaaatatgataaagctattgaattaaatgttccaactttaaat
gaaaatgaaatgaattcaataattttataa
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