Actomonas aquatica: K1X11_021410
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Entry
K1X11_021410 CDS
T09911
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aaqw
Actomonas aquatica
Pathway
aaqw03030
DNA replication
aaqw03410
Base excision repair
aaqw03420
Nucleotide excision repair
aaqw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aaqw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K1X11_021410 (ligA)
03410 Base excision repair
K1X11_021410 (ligA)
03420 Nucleotide excision repair
K1X11_021410 (ligA)
03430 Mismatch repair
K1X11_021410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aaqw03032
]
K1X11_021410 (ligA)
03400 DNA repair and recombination proteins [BR:
aaqw03400
]
K1X11_021410 (ligA)
Enzymes [BR:
aaqw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K1X11_021410 (ligA)
DNA replication proteins [BR:
aaqw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K1X11_021410 (ligA)
DNA repair and recombination proteins [BR:
aaqw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K1X11_021410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K1X11_021410 (ligA)
MMR (mismatch excision repair)
DNA ligase
K1X11_021410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K1X11_021410 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Zn_ribbon_NUD
MarR
RNA_ligase
zf-tcix
PGRL1_N
Motif
Other DBs
NCBI-ProteinID:
WRQ87379
UniProt:
A0ABZ1C721
LinkDB
All DBs
Position
5605187..5607223
Genome browser
AA seq
678 aa
AA seq
DB search
MNPADAAQRIDDLRASIAHHDELYYRQAEPEITDRDYDALKQELADLEAEFPLFALADSP
TQKVGDDRSEGFQNYTHRERMMSLDNTYSDEEMREFIARVQRDLEREELSFVVEPKIDGL
AVSVTYEQGKLVRAVTRGNGVEGDDITANARTIASLPNELKATAGVPVPDVIEIRGEIYL
TLEEFQRINGEREEAGLQLYANPRNLAAGTIKQLDPAVVAQRKLEIVLYGRGYTEPVEAL
PATQEEFFAWVKAWGLPTVEKQWIAHSGDEVLAAIRELDAMRGSFAYATDGAVVKLDSIP
LQRTLGATSKAPRWAMAYKFEAERAETLLRDITIQVGRTGVLTPVAELEPVQLAGTTVSR
ATLHNASEIARKDIRIGDTVAVEKAGEIIPAVIGVNLEKRKPECVPYAFPEACPACGTAA
VQLEGEVAVRCPNRECPVQVRRRVIHFASRACLDIEGLGTAMVDQLVDKGWVKRLPDLYH
LNRDDLLTLGKSVEKSTDKLLAAIEASKTAELWRFIHGLGITHVGAAAAKDLARVFGGLQ
PLADATMDAYIREKESVISGIGQTMAEAIVGFFADAYNRAVVDDLIAAGVQPEAPSAGGG
GTLFAGLTFVLTGTLPTLTRNEAAEMIEAAGGKVSGSVSKKTSFVVAGSEAGSKLAKAEK
LGVAVIDEAKLREMLAGA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgaaccctgcggacgcggcccaacgcatcgatgacctgcgcgcttcaatcgcgcaccat
gacgaactctactaccggcaggcggagccggagatcaccgatcgtgattacgatgcgctg
aagcaggagttggccgatttggaggcggagtttccactcttcgcgttggccgattcgccg
acgcagaaggtgggcgatgatcgcagcgaggggtttcagaactacacccatcgcgagcgc
atgatgagtctcgacaacacctactccgacgaggagatgcgcgagtttatcgcccgggtg
cagcgtgatctggagcgggaggagttgagcttcgtggtggagcccaagatcgacgggttg
gcggtgagcgtgacctacgagcagggcaaactggtgcgcgccgtcacgcgcggcaacggc
gtggagggcgacgacatcaccgccaatgcgcgcacgattgcgtccttgccgaatgagctg
aaggcaaccgccggcgtgccggtgccggacgtgatcgagatccgcggtgagatctacctt
acgctcgaagagtttcagcgcatcaacggtgagcgcgaggaggccgggctgcagctctat
gcgaatccgcgcaacctcgccgccggcacgatcaagcaactcgacccggcggtggtcgcg
cagcgcaagctggagatcgtgctctacggtcgcggttacaccgagccggtcgaagcgttg
ccggcaacgcaggaggagttcttcgcctgggtgaaggcgtggggactgccgacggtggag
aagcagtggatcgcgcacagcggcgacgaagtgctggcggcgattcgcgagctcgacgcg
atgcgcggcagcttcgcctacgcgacggatggggcggtggtgaaactcgattcgattccg
ctgcaacgcaccctcggcgcgacgagcaaagcgccgcgttgggcgatggcttacaaattt
gaggcggagcgggcggagacgctgctgcgcgacatcacgattcaggtgggccgcacgggc
gtgctcacgccggtggcggaactggagccggtgcaactcgccggcacgacggtgtcacgg
gcaacactgcacaacgcgtcggaaattgcccgcaaggacatccgcatcggcgacacggtg
gcggtggagaaggcgggtgaaatcatccccgccgttatcggtgtgaatctggaaaaacgg
aaaccggagtgtgtgccctatgcgttccccgaggcgtgtccggcctgcggcacggcagcg
gtgcaactcgagggagaggtggccgtgcgttgtccgaaccgggagtgtcccgtgcaggtg
cgccgtcgcgtgattcacttcgcctcgcgggcctgtctcgacatcgaggggctgggcacg
gcgatggtggaccagttggtcgacaaggggtgggtcaaacgcctgcccgacctgtatcac
ctcaatcgcgacgatctgctcacgctgggcaagagtgtggagaaatcgaccgacaagctc
ctggccgcgatcgaggcgagcaagacggcggagttgtggcgcttcatccacggcctcggc
atcacgcacgtgggcgcggcggcggcgaaggatttggcgcgtgtcttcggcggactgcag
ccgctggcagatgcgacgatggacgcctacattcgcgagaaggagtcggtcatcagcggc
atcggccaaaccatggcggaggcgatcgtgggcttctttgccgacgcctacaatcgggcg
gtcgtcgacgatttgatcgcggcgggcgtgcaacccgaagcgccctcggcgggcggcggg
ggcaccttgtttgcggggctcaccttcgtgctcaccggcaccttgccgacgctcacgcgc
aacgaggcggcggagatgatcgaagcggccggcggcaaagtgagtggcagcgtgagcaag
aagaccagctttgtggtcgcgggcagtgaagccggttccaagttggccaaagccgagaag
ctcggcgtcgcagtgatcgacgaagcgaagttgcgcgagatgctggcgggggcgtga
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