Amedibacterium intestinale JCM 30884: Aargi30884_26370
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Entry
Aargi30884_26370 CDS
T06426
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aarg
Amedibacterium intestinale JCM 30884
Pathway
aarg03030
DNA replication
aarg03410
Base excision repair
aarg03420
Nucleotide excision repair
aarg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aarg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Aargi30884_26370 (ligA)
03410 Base excision repair
Aargi30884_26370 (ligA)
03420 Nucleotide excision repair
Aargi30884_26370 (ligA)
03430 Mismatch repair
Aargi30884_26370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aarg03032
]
Aargi30884_26370 (ligA)
03400 DNA repair and recombination proteins [BR:
aarg03400
]
Aargi30884_26370 (ligA)
Enzymes [BR:
aarg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Aargi30884_26370 (ligA)
DNA replication proteins [BR:
aarg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Aargi30884_26370 (ligA)
DNA repair and recombination proteins [BR:
aarg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Aargi30884_26370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Aargi30884_26370 (ligA)
MMR (mismatch excision repair)
DNA ligase
Aargi30884_26370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Aargi30884_26370 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_ligase
RNA_lig_T4_1
HHH
Relaxase_C
OB_DPOA2
Motif
Other DBs
NCBI-ProteinID:
BBK23734
UniProt:
A0A6N4TMM6
LinkDB
All DBs
Position
2659439..2661427
Genome browser
AA seq
662 aa
AA seq
DB search
MDVKNRILELRRKLDAFAYEYYVLDQPSVSDQEYDRYYQELVALEDANPEYKDPNSITQR
VGGVVLDAFTKVEHKNRMLSLGNAFNLEDLKAFDERVRAVKPDASYVVELKMDGLAISLH
YIDGRFHQAVTRGDGLVGEDVTNNVRTIPSIPMHIDAQGEVEVRGEVYMPKKSFEELNTK
REENGEELFANPRNAAAGSIRQLDSKIAAQRKLDAFLYYLEDAASFGIQTHEEALETLEK
WHIKVNPLRKVCKTIEEAWQFIQEIQEKREELPYEIDGMVLKVNELSSWNVLGTTVKAPR
YAIAYKFPAEEVVTKLLDIVVTVGRTGRVTPNAVLEPVRVAGTTVSAAQLHNEDMIKEKD
IRIHDDVVIRKAGDIIPEVVRPLVEKRNGTQGIYHFPTQCPICSGALVRLPNEAAHYCIN
QDCPARVVESMIHFASRDAMNIDTLGDKKIEFFHKEGLLNTIEDIYRLKDHEEEILSMEG
FKEKSFMKMIDAIEKSKENPLEDLIYGLGIRQVGKKAAKVLAKHFLTMDALMAADRDAFV
AIKDIGEITADSIVAFFREEKNMELIDHLKAFGLRMDSEKEEIKESFFTGKTVVLTGTLT
QMTRNEAKAMLESLGANVSGSVSKKTDLVVYGEAAGSKLTKARDLGVEVMDEETFLQEVK
AS
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggacgttaaaaatcgaatattagaattacgtagaaaattggatgcctttgcatatgaa
tattatgttttagatcagccaagtgtttctgatcaggaatatgatcgctattatcaggaa
cttgttgccttagaggatgcaaatccagaatataaagatcctaactccattacacagcgt
gtaggtggtgtagttttggatgcttttacaaaagttgaacataaaaatcgtatgttatct
ttaggaaatgcgtttaatttagaagatttaaaggcgtttgatgaaagagtgcgtgcggtt
aaaccagatgccagttatgtggttgaattgaaaatggatggtttggcaatttctctgcat
tacatagatggacgctttcatcaggctgttacacgtggtgatggacttgtcggagaagat
gttacaaacaatgtgcgtacgattccttctattcctatgcatattgatgcacaaggggaa
gtggaagtacgtggagaagtgtacatgccgaaaaaaagttttgaagagctgaatacaaaa
cgagaagaaaatggtgaagaattgtttgcgaatccacgaaatgcggctgcaggaagtatt
cgtcagttagacagtaaaatagctgcccaaagaaagctggatgcgttcttatattattta
gaagatgcagcatctttcggcatacagacgcatgaagaagcactggaaactttagagaaa
tggcatatcaaggtaaatccattgcgcaaggtatgcaagacaatagaagaagcatggcag
tttatacaggaaattcaggaaaaaagagaagagcttccttatgaaattgatggtatggtt
cttaaagtaaatgaactttcttcatggaatgttttaggaaccacagtaaaagctcctcgt
tatgccattgcctataaatttcctgcagaagaagttgttaccaagcttttagatattgtg
gtaacggtaggtagaacagggcgtgttacaccgaatgcagtgctggaaccggttcgtgta
gcaggaacaacagtatctgcggcacagcttcataatgaagatatgatcaaagaaaaagat
attcgtattcatgatgatgttgtgatacgcaaagctggagatattattccggaagttgtt
cgtcctttggtagaaaaaagaaatggaacgcaaggaatttatcattttccaacacaatgt
ccaatctgctcaggagcgctggttcgacttccaaatgaagcggcacattactgtattaat
caggattgcccagctcgtgttgtggaaagtatgattcattttgcaagcagagatgcgatg
aatatcgatactttaggagataaaaagattgaatttttccacaaggaaggattattaaat
acgatagaagatatttatcgtttaaaagatcatgaagaggaaattttaagtatggaagga
tttaaagaaaaatcctttatgaaaatgatcgatgcgattgaaaaaagtaaagagaatcct
cttgaggacttgatttatggattaggaattcgtcaggttggtaaaaaagctgctaaggtt
ttagcaaaacatttcttgacgatggatgcattgatggcagctgatcgtgatgctttcgtt
gcgattaaagatattggagaaattacggcggatagtatcgttgcattttttagagaagag
aaaaatatggaacttattgaccatttaaaagcttttggacttcgtatggacagtgaaaaa
gaagaaattaaggaaagtttctttactggaaaaacagttgtattaactggaacacttaca
cagatgacacgaaatgaagcaaaagcaatgttggagtctttaggagcaaatgtcagtggt
tctgtttctaagaaaacggatttggtagtgtatggagaagctgccggcagtaagcttact
aaggcaagagatttaggtgtagaggtaatggatgaagaaacctttttacaggaggtgaaa
gcatcatga
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