Candidatus Amoebophilus asiaticus: Aasi_1926
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Entry
Aasi_1926 CDS
T00730
Name
(GenBank) hypothetical protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aas
Candidatus Amoebophilus asiaticus
Pathway
aas03030
DNA replication
aas03410
Base excision repair
aas03420
Nucleotide excision repair
aas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Aasi_1926
03410 Base excision repair
Aasi_1926
03420 Nucleotide excision repair
Aasi_1926
03430 Mismatch repair
Aasi_1926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aas03032
]
Aasi_1926
03400 DNA repair and recombination proteins [BR:
aas03400
]
Aasi_1926
Enzymes [BR:
aas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Aasi_1926
DNA replication proteins [BR:
aas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Aasi_1926
DNA repair and recombination proteins [BR:
aas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Aasi_1926
NER (nucleotide excision repair)
GGR (global genome repair) factors
Aasi_1926
MMR (mismatch excision repair)
DNA ligase
Aasi_1926
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Aasi_1926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
BRCT_2
PTCB-BRCT
HHH
Zn_ribbon_Top1
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
ACP21137
UniProt:
C3L496
LinkDB
All DBs
Position
complement(1747264..1749279)
Genome browser
AA seq
671 aa
AA seq
DB search
MDKEQARKEIKRLTALVAYHNKLYYEEAQPEISDYEFDQLLEKLIALENQFPDLRLPNSP
TQRVGGEPSKKFATVYHQYPMLSLSNTYSAEEVMQFVKRAHKQLPGATIEFFCELKFDGV
AISLLYKEGKLDKVVTRGDGFKGDDITENAKQIPNIPQIIEHKDLPPAFEVRGEAFMSLA
DFEKLNRDRLAHGLEPLANPRNATAGTLKTLKSTGPKRWLDCYMYSLLSTDMDLPTHEVC
IQWLEKWCFHVSPTYKKCRTLEEVMAYIEYWESAKNSLPVAIDGVVIKVNDTLQQNKLGL
TAKSPRWAIAYKYKPENLATILESVDYQVGRTGVITPVAHLKPILLAGTIVKRATLHNAG
EIQRLDLHLGDTVFIEKGGEIIPKITGTDVSKRSLDSEPVKFVTHCPACGTELVKRYEKA
LYYCPNTKGCPYQLQGLLKHFVHRKAMDIRSIGKQTIEMLINRGLVHTPADLYSLKYQDI
RSLEGFKDLATRNVLSGIESSKQRPFERVLFALGIRHVGEVIADKITQYYTDIDTLSNAT
VEDLIAIPFIGTEIAHSVTNYFENPENLALIDVLKQAGLQLSRPQLATVFATQSLPLSGK
TFVISGTFQNFEREELKELIKKKGGGILTNISAKLNYLIIGENPGPGKVAQAQALGISTI
NETEILQMLEL
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggataaagagcaggctagaaaagaaataaaaaggctgactgcattagttgcctaccac
aataagctatactatgaagaggctcagcctgaaatatcagactatgagtttgatcagctt
ttagaaaagcttatagcacttgaaaaccagtttcctgatcttaggctacctaattctcct
acccaacgtgtaggcggagaaccttctaaaaaatttgcaacagtttatcatcagtatcct
atgctctctttgagtaatacttactcagcagaagaggttatgcaatttgtaaagcgtgct
cacaagcaacttccgggagcaaccatagaattcttttgtgagcttaagtttgatggagta
gctattagccttttatataaagaaggaaaattagataaagttgtaacgcgtggagatggt
tttaagggagatgatattactgaaaatgctaagcaaatacctaatattccacaaataatc
gagcataaagatctgccaccagcatttgaagtaaggggagaggccttcatgtcactagct
gattttgaaaaattaaatagagataggctagcacatgggctggaacctttagctaatccc
agaaatgctactgcaggcactcttaagacactcaagagtacagggcccaaaagatggttg
gactgctatatgtattctttattatctacggatatggatttgccaacccatgaagtatgt
attcaatggctagaaaagtggtgctttcatgtttctcctacttataaaaaatgccggact
ctggaagaggtaatggcttatattgaatactgggagtctgccaaaaactcgcttcctgtt
gctatagatggggtggtaattaaagtaaatgatacgcttcagcagaataagctaggctta
actgctaaaagtcctcgctgggctattgcatataaatataaaccagagaatctagctact
atactagaatctgtagattatcaagtaggtagaacaggagtaattacaccagtagctcat
ttaaagcctattcttttggctggcactattgtaaaaagagcaactttacataatgcaggt
gagattcagcgcctagaccttcacttaggtgatacagtttttatagaaaaggggggtgaa
attatacctaagataacaggtacagatgtaagtaaaagaagtctggatagcgagcctgta
aaatttgtaacacattgtcctgcatgtggcactgagttagtaaaaagatatgaaaaggca
ctatactattgtcctaatacaaaaggatgtccttatcagctgcaaggtttgctcaaacat
tttgtgcataggaaagctatggatatccgctctattggcaagcagactatagaaatgttg
attaataggggcttggtgcatacaccagccgacttatattcgctcaaataccaggatata
cgttctttagaaggttttaaagacttggctactcgcaatgtactaagtggtatagagagc
tctaaacaacgtccttttgaacgtgttttatttgctctaggaattagacatgtgggcgaa
gtaattgccgataaaattacgcagtattatactgacatagatactttatctaatgctact
gtagaggatttaatagctattccttttattggcacagaaattgcccatagtgtaaccaac
tattttgaaaaccctgaaaatttagcactcatagatgtacttaagcaagctggtttgcag
ttaagcaggcctcagctagcaactgtttttgccactcagtcgctaccactatcaggaaaa
acttttgtaatttcaggcacctttcagaatttcgaaagagaagagttaaaagagttgatt
aaaaagaaaggagggggaatactgactaatatttcggctaaactaaactatttgataata
ggcgaaaatcctggtcctggtaaagtagcacaagcacaagcgctaggtatttctactatc
aatgaaacggaaatcttacaaatgctggaattatga
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