Acinetobacter sp. AS23: K6I41_15195
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Entry
K6I41_15195 CDS
T11553
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aasz Acinetobacter sp. AS23
Pathway
aasz03030
DNA replication
aasz03410
Base excision repair
aasz03420
Nucleotide excision repair
aasz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aasz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K6I41_15195 (ligA)
03410 Base excision repair
K6I41_15195 (ligA)
03420 Nucleotide excision repair
K6I41_15195 (ligA)
03430 Mismatch repair
K6I41_15195 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aasz03032
]
K6I41_15195 (ligA)
03400 DNA repair and recombination proteins [BR:
aasz03400
]
K6I41_15195 (ligA)
Enzymes [BR:
aasz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K6I41_15195 (ligA)
DNA replication proteins [BR:
aasz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K6I41_15195 (ligA)
DNA repair and recombination proteins [BR:
aasz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K6I41_15195 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K6I41_15195 (ligA)
MMR (mismatch excision repair)
DNA ligase
K6I41_15195 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K6I41_15195 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
URM40294
LinkDB
All DBs
Position
complement(3231997..3234036)
Genome browser
AA seq
679 aa
AA seq
DB search
MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDQVQSDSP
TTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLPNQKVQYEVELKLDGL
AISLWYENGVLTRGVTRGDGETGEDITQNVKTIRNLPKVLHSDQFEIPRLLEVRGEVLMP
KSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPNHSLT
TMHDSLQWLTQLGFEIAERQYLCNSIQEVQQRYEQIQQERPDLQVEIDGMVVKVDDLKQQ
QQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVT
LHNIGEIHRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRSPDAEIVHLPESCPVCASPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHL
HEHRETLLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTL
EALKAADVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHWDAPTAPTRQPLN
GESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAV
MNETDFLSLMASYGQTLSE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacttccgtgatcgaacagatgcgtcagcttattcaactgattgcaaagcat
aaccacgcctattatgtgatggatcagccgacaatctcggacagtgaatatgatcattta
tttcaccagttaaaagctttagaagagcaatatcctgatcaggttcaatcagattctcca
acgacaaaggtaggcggccaagcactctctaaatttcaaagtgtgactcatgtcgttccg
atgctttctttggggaatgtttttaatcaggaagacttatttgcatttgctcgccgtgtt
gaagagcgtttgcctaaccaaaaagtacaatacgaagtagaactaaaacttgatggtctt
gcgatttcgctttggtatgaaaacggtgttttaacacgtggtgttacacgcggtgacgga
gaaaccggagaagacattacccaaaacgttaaaacaattcgcaacttgccgaaagtgttg
cattcagatcaatttgaaattccacgtttgcttgaagtccgcggtgaagtactcatgcca
aagtctggctttgaaaaacttaatgccgatcaggaagcaaaaggtgagaaaacgtttgcc
aacccgcgtaatgccgcagcaggtagtttaagacagctcgacccgaatattgctgctagt
agacctttagcgttttatgcgtatggtattgcccagtgcgaaccaaatcatagcttaaca
accatgcacgacagcctacaatggcttacgcaacttggatttgaaattgctgagcgtcaa
tatctatgtaattcaattcaagaagtacagcagcgttatgagcaaattcaacaagagcgt
ccagatctacaagttgaaattgatggaatggtcgtaaaggttgatgacctaaaacagcaa
caacaacttggtttcttaagtcgtgagccacgttgggcaacggcttataaattccctgca
caagctgcattaactacagttgatcagattgattggcaagtagggcgtacaggtacttta
actcctgtagcgcgtttaaaccctgtatttgtagggggagtaacggtttccaacgtaact
ttacacaacattggtgaaatccatcgtctagatgtacgtgttggtgatacggttagtgtt
tatcgtacgggcgatgttattcctaaagtagaaaaagtttggccagaattccgttcacct
gacgctgaaattgtacatttacctgaaagctgtcctgtttgtgcctcaccagttgtaatg
cctgagggagaagctttagcacgttgttctggtggcctttactgtgctgctcagcgaatt
gaagcgattcgtcacttcgtatcacgtaaagctctcgatattgaaggtctgggagaccgc
tgggtagagtctttattacatctcgatttgctcaaagatgttgccgacatttaccatttg
catgagcaccgagaaactttgctcggtattgaaaaaatgggtgagaagtcggtacaaaac
ctcattgatgccattgaagccagtaagaagacaacgcttgctcgttttatttatgctctg
ggaattcgtggggtgggtgaaacaacagctagaatgttggccaatactttccaaacttta
gaagcacttaaagctgctgatgttgaagctttaaagaaaaccccagatgtcggtgatatt
accgcagagtggattgctgactttttcttggcaccacataacattgaagtgcttgatcgc
ttaattgcagccggaattcattgggatgcgccaacagctccaacacgtcagccgttaaat
ggtgaaagctgggtgttaacaggcacattagagcaaatgacccgtgatcaggcgactcaa
atgctacaagcattaggtgcgcgtgtaagcggtagtgtatcaagcaagaccaaatgcgtt
gttgcgggcgagaaagcaggttcgaaattagaaaaagcagcaaaacttggtattgctgtt
atgaatgagactgatttcttatcacttatggcgagctacgggcagactttaagcgaatag
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