Aggregatibacter actinomycetemcomitans D11S-1: D11S_1530
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Entry
D11S_1530 CDS
T00993
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aat
Aggregatibacter actinomycetemcomitans D11S-1
Pathway
aat03030
DNA replication
aat03410
Base excision repair
aat03420
Nucleotide excision repair
aat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D11S_1530 (ligA)
03410 Base excision repair
D11S_1530 (ligA)
03420 Nucleotide excision repair
D11S_1530 (ligA)
03430 Mismatch repair
D11S_1530 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aat03032
]
D11S_1530 (ligA)
03400 DNA repair and recombination proteins [BR:
aat03400
]
D11S_1530 (ligA)
Enzymes [BR:
aat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D11S_1530 (ligA)
DNA replication proteins [BR:
aat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D11S_1530 (ligA)
DNA repair and recombination proteins [BR:
aat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D11S_1530 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D11S_1530 (ligA)
MMR (mismatch excision repair)
DNA ligase
D11S_1530 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D11S_1530 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ACX82905
LinkDB
All DBs
Position
complement(1454364..1456376)
Genome browser
AA seq
670 aa
AA seq
DB search
MTTSIQQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTADSPT
QRVGARPLSEFAQIRHEIPMLSLDNAFSNEEFFSFVKRIQDRLALVPEPLTFCCEPKLDG
LAVSILYVNGVLSQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPH
AGFERLNERALEHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVELPPT
HFERLQWLKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQQ
RLGFISKAPRWAIAYKFPAEEVRTRLLDVEFQIGRTGAVTPVAKLEPVSVGGVTVSNATL
HNNDEIKRLGISIGDIVLIRRAGDVIPQVIKLVHKAKKGNKPIVFPTHCPVCDSLIIRIE
GEAVARCTGGLFCAAQRKEALKHFVSRKAMDIDSVGGKLIEQLVDRELIHTPADLFKLDL
TTLTRLERMGPKSAENALASLEKAKNTTLARFIFALGIRDVGEATALNLANHFKTLEALQ
NADLEQLQQVPDVGEVVANRIFVFWREAHNVAVVEDLIAQGVHWETVDVQEVKENPFKGK
TVVLTGTLSQMGRNDAKALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLS
EEEFLGWING
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgacaacctcaattcaacaacaaatcgacgaccttagaaaaaccttacgccaccacgaa
tatcaataccacgttttagacgatccgcagattcccgacagcgagtatgatcgcctgttt
catcagcttaaagcgttggaacaacaacatcccgaactggttaccgccgattcgccgacc
caacgcgtgggtgcgcgtccgttgtccgaatttgcacaaattcgccatgaaattcccatg
ctgtccttggataacgccttttccaatgaggaatttttctccttcgtcaaacgcattcaa
gatcgcctggcactcgtgccggaaccgctgaccttttgctgcgaaccgaaactggacggt
ttggcggtcagcattttgtacgtgaacggcgtattgtcccaagcggcaacccgtggtgac
ggcaccaccggtgaagacattacgcaaaatatccgcaccattcgcaacattccgttgcaa
ctgctgacggataatccgccggcgcgtttggaagtgcgcggcgaggtgttcatgccgcac
gcgggctttgagcgattaaatgaacgcgcattggaacacggcgagaaaacctttgccaat
ccgcgcaatgcggcggcgggctcactacgtcaattggatccgaaaatcaccagccaacgc
ccgttaatgctcaatgcgtatagtatcggcattgccgaaggcgtggaactgccgccgacc
cattttgaacgcctgcaatggctgaaatccgtgggtattccggtaaacaatgaaattcag
ttgtgcgacggcattgaaaacgtgttgaatttctaccgcactattatggcgaaacgcagt
tccctcggttatgacatcgacggcgcggtgctgaaaatcaacgatattgcgctgcaacaa
cgccttggttttatttccaaagcaccacgttgggcgattgcttataaattccccgcagaa
gaagttagaacaagattattggatgttgaattccaaattggtagaacaggagctgttact
cccgttgctaaactagaacctgtttctgttggaggggttaccgtaagtaacgcaacttta
cacaataatgatgaaataaaaagattaggaatatccattggtgatattgtcttaataaga
cgcgctggagacgttattcctcaagttattaaactcgtacataaagccaaaaaagggaat
aaaccaattgtgtttccgacacactgccccgtttgtgattctttgattatccgtatcgaa
ggtgaagccgtcgcacgctgcaccggcggattattctgcgcggcgcaacgcaaagaagcg
ttaaaacactttgtgtcacgcaaagccatggacatcgacagtgtgggcggcaagctcatt
gaacagctggtggatcgcgaattgattcataccccggcagatttgttcaagttggattta
accaccctcacccgccttgaacgaatgggaccgaaatccgccgaaaatgccttagccagc
ttagaaaaagcgaaaaataccacccttgcccgtttcattttcgccttgggcattcgtgac
gtgggcgaagccaccgcgttaaatctggcaaatcatttcaagaccttggaagcgttgcaa
aatgccgatttggaacagttacaacaggtgcccgacgtaggcgaagtggtagcaaatcgg
atttttgtgttctggcgtgaagcgcataatgtcgccgtggtggaagatctcatcgcccaa
ggcgtgcattgggaaaccgttgacgtgcaggaagtgaaggaaaatccgttcaaaggcaaa
actgtggtgctcaccggcaccctctcgcaaatgggacgcaacgacgccaaagccttgtta
caacaactcggcgccaaagtcagcggcagtgtttccgccaaaaccgactatgttatcgcc
ggtgaagccgccggctcaaaactaagcaaagcggcggagttaggggtgcaggtgttgagt
gaggaagaatttttgggctggatcaacggataa
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