Alteromonas australica DE170: EP12_09545
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Entry
EP12_09545 CDS
T03858
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aaus
Alteromonas australica DE170
Pathway
aaus03030
DNA replication
aaus03410
Base excision repair
aaus03420
Nucleotide excision repair
aaus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aaus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EP12_09545 (ligA)
03410 Base excision repair
EP12_09545 (ligA)
03420 Nucleotide excision repair
EP12_09545 (ligA)
03430 Mismatch repair
EP12_09545 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aaus03032
]
EP12_09545 (ligA)
03400 DNA repair and recombination proteins [BR:
aaus03400
]
EP12_09545 (ligA)
Enzymes [BR:
aaus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EP12_09545 (ligA)
DNA replication proteins [BR:
aaus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EP12_09545 (ligA)
DNA repair and recombination proteins [BR:
aaus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EP12_09545 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EP12_09545 (ligA)
MMR (mismatch excision repair)
DNA ligase
EP12_09545 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EP12_09545 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
AJP43869
LinkDB
All DBs
Position
2069094..2071127
Genome browser
AA seq
677 aa
AA seq
DB search
MSETDLQVKQRIDELRARLAEYNYQYYVKDAPTVPDAEYDREMQELMALEQAHPEFQSVN
SPSQKVGGQALTAFEQVTHDVPMLSLDNAFDEASLLAFEKRILDRLKQSVTLAFSCEPKL
DGLAVSILYEDGQLVRAATRGDGQVGENITANVRTIANVPLSLRGKNWPQRVEVRGEVFM
PKNGFETLNENQRKSGGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYSLGVVTPSEFE
LPEQHSERLNTLASWGVPLCPDITTAQGGKGCLAYYQHILEKRDALPYDIDGVVFKVDDI
QLQNTLGFVARAPRWAIAQKFPAQEEVTQLIEVEFQVGRTGAITPVARLEPVFVGGVTVS
NATLHNQDEIERLGVKVGDYVVIRRAGDVIPQVVSVVEAKRQSNVKPIEFPTQCPVCDSN
VEKLEDEAVARCTGGLICAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDANLVHSPADF
FTLSLPKLIGLERMAEKSASKLLDSLEASKRTTLAKFLYALGIREVGEATASNLALHFRT
LESIRQASIDDLIAVQDVGEIVAAHIVNFFNESHNTDVIDALLSVGINWPEIEAKEEGVT
LPLEGKTCVITGTLSTMGRSDAKSALQALGAKVAGSVSKNTDFLVAGEKAGSKLTKAQDL
GVDVWDEEALVAFLERH
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaccgatctacaagtgaagcaacgcatagacgaacttcgtgctcgactcgct
gaatataattatcaatattacgttaaagatgcgcccaccgtaccggacgcagagtacgac
cgggaaatgcaggagttgatggcgttagagcaagcgcaccctgagtttcaaagcgttaat
tcacccagccaaaaagtgggcggtcaagcgctaaccgcgtttgagcaagtgactcacgat
gtgccaatgctgtcgctagataacgcgtttgatgaagcgtcattgttggcctttgaaaag
cgaattctagaccgacttaaacaatcagtcacgctggcttttagctgtgaacctaagtta
gatggtttagcggtgagtattctttacgaagacggtcagttagtgcgtgcagctacccgc
ggtgacgggcaagtaggtgagaatattaccgctaatgtacgcaccatcgccaatgtcccg
ttatcgttaaggggtaaaaattggccacagcgcgttgaagttcgcggtgaagtgtttatg
cctaaaaacggttttgaaacactgaatgaaaatcagcgaaaaagcggaggaaaggtattt
gcaaaccctcgtaatgcggcagcgggcagtttgcgccagttagattccaaaataacggca
aaacgacctcttatgttctatgcctattccttaggagttgtgaccccaagtgaattcgaa
ttgcccgaacagcatagtgaacgcttaaatacccttgcttcttggggcgtgccgctgtgc
ccagatattaccacagctcaagggggaaagggctgcttagcctattaccaacacatttta
gagaaacgtgatgcccttccttacgatatcgatggtgttgtattcaaagtggatgatatt
cagctgcaaaacacacttggtttcgttgctagagcgcctcgctgggctattgcacaaaag
tttccagcgcaagaagaggttactcagttaattgaagtagaatttcaggtagggcggaca
ggggctattacgcccgttgcgcggttagagccggtattcgtcggtggcgtaaccgtatct
aatgccacgcttcataaccaagatgaaattgagcgtctaggtgtgaaagttggcgactac
gtggttattaggcgagctggggatgttataccgcaggtcgtttctgtggttgaagctaaa
cgccagagtaacgtgaagcccatcgagtttcctacgcagtgcccggtgtgtgattcaaat
gttgaaaaacttgaagatgaagcggtagcgcgttgtacaggggggcttatttgtgcggca
caacgtaaacaagcactcaaacatttcgcttctagaaaagcgtttgatattgacggcttg
ggcgacaaacttgtcgatcaattagtggatgcgaatttagtacacagcccggcagacttc
tttacgctttcgcttccaaagctaataggtttagagcgcatggctgaaaaatcggcgtct
aaacttcttgattcactggaagcgtctaaacgtaccacattggctaagtttctttacgcg
ctaggtattcgtgaagttggtgaagccacagcgtccaatttagccttgcactttcgtacg
ttagaaagcattaggcaggcaagcattgatgaccttatcgcggttcaagatgtgggagaa
atcgttgctgcgcatatagtcaatttctttaacgaaagtcacaataccgatgttattgat
gctttgttgtctgttggcattaactggccagaaatagaggcgaaagaggaaggtgtaact
ttaccattggagggtaaaacctgcgtgattacgggcacactaagtacgatggggcgttcc
gacgcaaaatcagcattacaagcattaggtgccaaagttgcgggatctgtatcaaaaaat
acggatttcttagttgcaggcgaaaaagcgggttctaaactgactaaagcacaggactta
ggtgtggacgtttgggatgaagaagcattggttgcgtttctagagcgccactga
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integrated database retrieval system
