Paracidovorax citrulli: Aave_2841
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Entry
Aave_2841 CDS
T00451
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aav
Paracidovorax citrulli
Pathway
aav03030
DNA replication
aav03410
Base excision repair
aav03420
Nucleotide excision repair
aav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Aave_2841
03410 Base excision repair
Aave_2841
03420 Nucleotide excision repair
Aave_2841
03430 Mismatch repair
Aave_2841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aav03032
]
Aave_2841
03400 DNA repair and recombination proteins [BR:
aav03400
]
Aave_2841
Enzymes [BR:
aav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Aave_2841
DNA replication proteins [BR:
aav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Aave_2841
DNA repair and recombination proteins [BR:
aav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Aave_2841
NER (nucleotide excision repair)
GGR (global genome repair) factors
Aave_2841
MMR (mismatch excision repair)
DNA ligase
Aave_2841
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Aave_2841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
Zn_Ribbon_TF
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ABM33409
UniProt:
A1TR21
LinkDB
All DBs
Position
complement(3125701..3127899)
Genome browser
AA seq
732 aa
AA seq
DB search
MAEHPDLFSAPAQEAPEDLGLRAAALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQALQAL
ETAHPELVTPDSPTQRVIGAVMEGLTPVRHTVPMLSIRTETDTEASGAETFDARVRRELK
LAPDAPPVEYVAEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLP
TGGRYGVPPVLEVRGEVYMRRADFDRLNERQREAGGKTFVNPRNAAAGAVRQLDSGIAAQ
RPLSFFAYGLGDITPAAEGGPDFATHFDMLRQLKAWGFPVAAQVRTARGASELVAFHQEV
GASRDQLPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGR
TGKLTPVARLAPVFVGGVTVTNATLHNLFEIRKKGVRVGDQVIVRRAGDVIPEVVGTVPA
ALLPVAGALQGSDALADAASGADGTAPGADAARAAPRSPYVPNFRMPRQCPICGSTVVRE
KGEANHRCTGGLFCPAQRKEALLHFAQRRAMDIEGLGEKLVDQLVEGQVIRTLPDLYRLG
LTALSSLDRMAEKSAQNVLAALEKSKHTTLPRFLFGLGIRHVGEATAKDLARHFGGLDAI
MDASVEQLLEVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWKEGPPAERATLPLAG
KTFVLTGTLPTLSREDAKDRLEAAGAKVAGSVSRKTHYVVAGEEAGSKLAKAQELGVPVL
DEAGMLALLQGR
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacatcccgacctgttttccgcccctgcccaggaggcccctgaagacctgggc
ctgcgcgccgccgcgctgcgggcgcagttgcaccaatgggcacaccagtactacgtgctg
gacgcacccaccgtgccggatgccgaatacgaccgcgtcttccaggccctgcaggcactg
gagacggcgcaccccgagctcgtgacacccgattcgcccacgcagcgcgtgatcggcgcg
gtgatggagggcctgacgcccgttcgccacacggtgccgatgctcagcatccgcaccgag
accgacaccgaggccagcggcgccgagacgttcgatgcccgcgtccgccgggagctcaag
ctcgcgcccgacgcaccgccggtcgaatacgtcgccgagcccaaattcgacggcctggcc
atgagcctgcgctatgagaacggtcgcctggtacaggccgccacgcgcggcgacggcgag
gtgggcgaggacgtgacccacaacatccgtaccatccgccagattcccctcacgctgccc
acgggcggccgctatggcgtgccgcccgtactggaggtgcggggcgaggtctacatgcgc
cgggcggatttcgaccggctcaacgagcgccagcgcgaggccggcggcaagaccttcgtc
aacccgcgcaatgcggcggccggcgcggtgcgccagctcgactcgggcattgccgcgcag
cggcccctgagcttcttcgcctatggcctgggcgacatcactccggcagcagaaggcggc
cccgacttcgcgacccatttcgacatgctgcggcagctcaaggcctggggcttcccggtc
gccgcgcaggtgcggaccgcgcggggcgcgtccgagctggtcgctttccaccaggaggtg
ggcgcgagccgcgaccagttgccctacgacatcgacggggtggtgtacaaggtcaacagc
ctggcgctgcagcgccagctgggattcgtgacccgcgagccgcggtgggccgtggcgcac
aagtacccggcgcaggagatggtcacccgcgtggagggtatcgacgtacaggtgggccgc
accggcaagctcacccccgtggcgcggctggctcccgtcttcgtcggtggcgtcaccgtc
accaacgccacgctgcacaacctgttcgagatccgaaagaagggcgtgcgcgtgggcgac
caggtcatcgtgcgccgcgcgggcgacgtgatccccgaagtggtgggcacggttcctgcg
gccctgctgcccgtggcgggcgcgctgcagggctccgatgccctggcggacgccgcttcc
ggggccgacggcacggcgccgggcgccgacgcggcgcgtgccgcgccgcggtcgccctac
gtgccgaacttccgcatgccgcgccagtgccccatctgcggcagtacggtggtccgggaa
aaaggcgaagccaaccatcgctgcacgggggggctcttctgcccggcccagcgcaaggag
gcgctgctgcacttcgcccagcgccgggccatggacatcgaaggcctgggcgaaaagctg
gtggaccagctggtggagggccaggtcatccgtaccctgccggacctctaccgcctgggc
ctgacggcgctcagcagcctggaccgcatggcggagaaatccgcgcagaacgtgctggcg
gccctggaaaagtccaagcacaccacgctgccgcgcttcctgttcggcctgggcatccgc
catgtaggcgaagccacggccaaggacctggcccgccatttcggcggcctcgatgccatc
atggacgccagcgtggagcaactgctggaggtgaacgacgtcggccccgtcgtggcggag
gccatccacacgttcttcgcgcagccccacaaccgcgaggtggtcgagcagctgcgggcc
tgcggcgtcacctggaaggaaggcccgcctgcagaacgcgccaccttgccgctggccggg
aaaacctttgttctcaccggcacgctgccgactctgagccgtgaagacgccaaggaccgg
ctcgaagccgcgggcgcgaaggtcgcaggctccgtcagcaggaaaacgcactacgtcgtg
gcaggcgaggaggccggcagcaagctggccaaggcacaggagctgggcgtgccggtactg
gacgaggcgggcatgctcgccctcctgcagggccgctga
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