Haploplasma axanthum: NCTC10138_00033
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Entry
NCTC10138_00033 CDS
T05950
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aaxa
Haploplasma axanthum
Pathway
aaxa03030
DNA replication
aaxa03410
Base excision repair
aaxa03420
Nucleotide excision repair
aaxa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aaxa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10138_00033 (ligA)
03410 Base excision repair
NCTC10138_00033 (ligA)
03420 Nucleotide excision repair
NCTC10138_00033 (ligA)
03430 Mismatch repair
NCTC10138_00033 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aaxa03032
]
NCTC10138_00033 (ligA)
03400 DNA repair and recombination proteins [BR:
aaxa03400
]
NCTC10138_00033 (ligA)
Enzymes [BR:
aaxa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10138_00033 (ligA)
DNA replication proteins [BR:
aaxa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10138_00033 (ligA)
DNA repair and recombination proteins [BR:
aaxa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10138_00033 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10138_00033 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC10138_00033 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10138_00033 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
5_3_exonuc
HHH
RNA_pol_A_CTD
Mig-14
MJ1579
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
VEU79581
UniProt:
A0A449BB88
LinkDB
All DBs
Position
1:complement(22816..24792)
Genome browser
AA seq
658 aa
AA seq
DB search
MEISKRINELIEVINKANYEYHTLDKPTISDYDYDMYLKELIELEEQNPELKRTDSPTGK
IGGIILDSFNKVTHDVPMMSLSNVFNSDDVRNFYERIKKEIKSFSLTTELKIDGLAVSLK
YVNGVYTSAATRGNGLIGEDITENVRTIKSLPLKLSEPLTIEVRGEIFMPQKSFHKVNEE
RIKNDEPLFANPRNAAAGTIRQLDSRVVAKRGLDIFLYTLVDAKKYVNTQSQVLEYLGRL
GFKVNPYFHVNENIDELINKISEYDKIRKTLAYDTDGVVIKVNEINYYDEIGVTAKSPKW
ATAYKFAPEEEETLLKDITFQVGRTGVITPVAELEPVLISGSMVSRATLHNEDYIINKDI
RKNDYVFVRKAGEIIPEVVRVNLDKRTNNIPFKMIDNCPVCNSKIERKQGEADYYCMNLD
CPARNLNSIIHFASRVAMDIDGLGEKVVEIFNNLGFLNSITDIYKLKNYYEELINIEGFG
KKSVDKLLEGIEKSKKIEANRLLFALGIKNVGAKVATILLNNFGSINNLFLATIDEMENI
NEIGSVIAKSVYEYFHNESNIIVLNELKDYGLNFEYKKLEIIEHEFNGKVFVLTGTLEHY
SRDEMKELLEKHGAKVTNSVSKKTDYLVAGSDAGSKLEKAKELKITILSENEVVERLK
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggaaatatctaaaagaattaatgaattaattgaggttataaataaggcaaattatgaa
tatcatacactcgataaaccaacaatttctgattatgattatgatatgtatttaaaagaa
ttaattgaattagaagaacaaaatccggagttgaaaagaactgattctcctaccgggaaa
attgggggaattatcttagatagttttaataaagtaactcacgatgttccgatgatgtca
ctttcaaatgtttttaatagtgatgacgttagaaacttttatgaaagaattaagaaagaa
ataaaaagttttagtttaacaacagaacttaaaatagatggattagcagttagtctaaag
tatgttaatggagtatatactagtgcagcaacaagagggaatggacttattggtgaagat
atcactgagaatgtaagaacaattaaaagtcttcctttaaaacttagtgaaccattaaca
attgaagttcgtggtgaaatctttatgccacaaaaaagctttcataaagtaaatgaagag
cgaattaaaaatgacgaacctttatttgcgaatccaagaaatgctgctgctggaacaatt
agacaattagattcaagagtagtcgctaaaagaggacttgatatctttttatatacatta
gttgatgctaaaaaatatgttaatactcaaagccaagtacttgaatacttaggaagattg
ggattcaaagttaatccatattttcatgtaaatgaaaacattgatgaattaataaataag
attagtgaatatgataagataagaaaaacacttgcatatgatactgatggtgttgttatt
aaagttaatgaaattaattattatgatgaaataggagttactgcaaaaagtccaaaatgg
gcaactgcttataagtttgctcctgaagaagaggaaacattgctaaaagatataactttc
caagttgggagaactggagtgattactccagtagctgaacttgaaccagttttaatatct
ggaagtatggtttcaagagcaacacttcataacgaagattatataattaataaagatatt
agaaaaaatgattatgtttttgttagaaaagctggagagattattccggaagttgttaga
gttaatttagataaaagaacaaataatatcccctttaaaatgattgacaattgtcctgtt
tgtaattctaagatagagagaaaacaaggagaagcagactattattgcatgaatcttgat
tgcccagctagaaacttgaatagtattattcattttgctagtagagttgcaatggatatt
gatggtcttggtgagaaagttgttgagatttttaataatttaggttttttaaatagtatt
acggatatttataagttaaagaattattatgaagaattaattaatattgaaggctttggt
aaaaaaagcgttgataagttattggaaggaattgaaaaaagtaaaaagattgaagctaat
cgattattgtttgctttaggtattaaaaatgttggtgctaaagtagcgacaattttatta
aataattttggtagtattaataacttattcctagcaacaattgatgaaatggaaaatatt
aatgagattggatctgtaattgctaaaagtgtttatgagtatttccataatgaaagtaac
ataatagttttaaatgaattgaaagattatggattaaatttcgaatataaaaaacttgaa
attattgagcatgaatttaatggtaaagtatttgttctaacaggaacattagaacattat
agtagagatgaaatgaaagaattattagagaaacatggagctaaagtaacaaattcagtt
tctaaaaaaactgattacttagttgctggttctgatgcaggttcaaaacttgaaaaagca
aaagaattaaagataactatcttaagtgagaatgaagtagtagaaaggttaaaataa
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