Candidatus Koribacter versatilis: Acid345_4656
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Entry
Acid345_4656 CDS
T00352
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aba
Candidatus Koribacter versatilis
Pathway
aba03030
DNA replication
aba03410
Base excision repair
aba03420
Nucleotide excision repair
aba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Acid345_4656
03410 Base excision repair
Acid345_4656
03420 Nucleotide excision repair
Acid345_4656
03430 Mismatch repair
Acid345_4656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aba03032
]
Acid345_4656
03400 DNA repair and recombination proteins [BR:
aba03400
]
Acid345_4656
Enzymes [BR:
aba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Acid345_4656
DNA replication proteins [BR:
aba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Acid345_4656
DNA repair and recombination proteins [BR:
aba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Acid345_4656
NER (nucleotide excision repair)
GGR (global genome repair) factors
Acid345_4656
MMR (mismatch excision repair)
DNA ligase
Acid345_4656
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Acid345_4656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
RNA_ligase
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ABF43656
UniProt:
Q1IHJ4
LinkDB
All DBs
Position
5512291..5514312
Genome browser
AA seq
673 aa
AA seq
DB search
MSRTKDPAKQAEDLREKLRYHEHRYYVLDDPEISDADYDVMMNELKALEAKHPELLTPDS
PTQRVGGKPREGFVKVAHSAPMLSLDNAYNEEELRDWARRVEELSGKAEIEYECELKLDG
LSMALRYQDARFVLAVTRGDGSIGEDVTLNLRTVKSVPLGVSSATLKKTHMLGDFEVRGE
VIFPTKSFEKMNEDREKQGLAKFANPRNAAAGAVRVLEPNITAQRRLDFYAYFLLVDGRV
HIDRQSEALDTLEKLGFKVNSNRAVFKSIDDVLKFIHKKEEDREKLPYEIDGVVIKVNST
ALWQRLGFTGKAPRWAIAYKYAARAAVTQVEDILVQVGRTGKLTPVAALKPVPIGGTTVS
RATLHNMDEIDRLGLLIGDWVQVERGGDVIPKVVKVIDDKDHPRGKKKFKMPERCPECGG
HVVRTEGEADHRCVNANCPAKLRESILHFASRGVMNIEGMGDSLVNQLVDRGLVKNVADI
YELDEEKLLSLERMGKKSAQNILDEIKGTKKLPLERVIYGLGIRMVGERTAQFLAEHFGS
LDGVMKATEEELLEVEEVGPRIAQSIHEFFAEPSNRELVKRLEAAGLQFKGVKKERGTAL
AGQTFVLTGSLPTYSRDEAKKLIEDAGGKVSGSVSKKTNYVVAGEEAGSKLDKARDLGVA
VIDEDALKKLLGK
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcaccaaagatcccgcaaagcaagccgaagacctgcgcgaaaagctgcgttat
cacgaacatcgctattacgtgctcgacgacccggaaatctcggacgccgactatgacgtg
atgatgaacgagttgaaggccttggaggccaagcaccccgagctgttgaccccggattcg
cccacccagcgcgtgggcggaaagccgcgcgagggctttgtaaaagtggcgcattccgcg
cccatgctgtcgctggacaacgcctacaacgaggaggaactccgcgactgggcccggcgc
gtagaagaactcagcgggaaggccgagatcgagtacgagtgtgagttgaagctggatggg
ctctcgatggcgctgcgctaccaggatgcgcgctttgtgctggccgtcacccgcggcgat
ggctccatcggcgaagacgtgacgctcaacttgcggacagtgaagtcggtgccgctcggc
gtcagttccgccacgttgaagaagacccacatgctcggcgatttcgaagtgcgcggcgaa
gtgatcttcccaaccaaatcgttcgagaagatgaacgaagaccgcgaaaagcaggggctg
gcgaagtttgctaacccgcgaaacgcggcggccggcgccgtgcgcgtgctggagcccaac
atcaccgcgcagaggcgtctggatttttatgcgtacttcctgctggtggacggccgcgtg
catatcgatcggcaatccgaggcgctcgacacgttggagaaacttgggttcaaggtgaat
tccaatcgcgcggtcttcaagtcgattgatgacgtgctgaaattcatccacaagaaagaa
gaagatcgcgagaagctgccttacgaaattgacggcgtcgtgatcaaggtcaacagcacc
gcactctggcagcgcctgggcttcaccggcaaagcgccgcgttgggcgatcgcttacaaa
tacgcggcgcgcgcggccgttacgcaggtggaagacattcttgtgcaggtgggacgcacc
gggaaactcacgccagtcgcggctttgaagcctgtgcccatcggcggcacaacggtgagc
cgcgccaccctccacaacatggacgagatcgatcgccttggattgctcatcggcgattgg
gtgcaggtcgagcgcggcggcgatgtgatccccaaggtcgtgaaggtcatcgacgacaag
gatcacccgcgcggcaagaagaaattcaagatgcccgaacgttgccccgaatgcggcggc
cacgttgtacgcaccgagggcgaggccgaccatcgctgtgtgaatgcgaattgtccggcg
aaactgcgcgagagcattctgcacttcgcgtcgcgcggcgtgatgaacatcgagggaatg
ggcgattcgctggtcaaccaactcgtcgaccgagggctggtaaagaacgtggccgatatc
tacgaactcgacgaagagaagcttctctcgctcgagcgcatgggcaagaagtcagctcag
aacatcctcgacgagattaaaggcacgaagaagttgccgctggagcgcgtgatctacggt
ctcggcatccgcatggtaggcgagcgcaccgcgcaattcctcgccgaacacttcggttcg
ctcgatggcgtgatgaaagccaccgaagaagagctgctggaagtcgaagaagtcgggccg
cgcatcgcgcagagtattcacgagttcttcgccgagcccagcaatcgcgaactggtaaaa
cgcctcgaagccgccgggctgcaattcaagggcgtaaagaaagagcgcggcaccgcgctc
gccggacaaaccttcgtcctgaccggcagcttaccgacctactcgcgcgatgaagccaag
aaactgatcgaagatgccggcggaaaagtcagtgggtcggtgagcaaaaaaaccaactat
gtcgtcgccggcgaagaggccggatcgaagctcgacaaagcccgcgacctgggcgttgcg
gtaatcgacgaagatgccctgaaaaaactgctagggaagtag
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integrated database retrieval system
