Acinetobacter baumannii AB031: IX88_05990
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Entry
IX88_05990 CDS
T03376
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abaa
Acinetobacter baumannii AB031
Pathway
abaa03030
DNA replication
abaa03410
Base excision repair
abaa03420
Nucleotide excision repair
abaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IX88_05990 (ligA)
03410 Base excision repair
IX88_05990 (ligA)
03420 Nucleotide excision repair
IX88_05990 (ligA)
03430 Mismatch repair
IX88_05990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abaa03032
]
IX88_05990 (ligA)
03400 DNA repair and recombination proteins [BR:
abaa03400
]
IX88_05990 (ligA)
Enzymes [BR:
abaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IX88_05990 (ligA)
DNA replication proteins [BR:
abaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IX88_05990 (ligA)
DNA repair and recombination proteins [BR:
abaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IX88_05990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IX88_05990 (ligA)
MMR (mismatch excision repair)
DNA ligase
IX88_05990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IX88_05990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AIL74743
LinkDB
All DBs
Position
1251435..1253471
Genome browser
AA seq
678 aa
AA seq
DB search
MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP
TTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLPNQKVQYEVELKLDGL
AISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMP
KSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLT
TMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQ
QQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVT
LHNIGEIHRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHL
HEHRETLLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTL
EALKAANVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIVAGIHWDAPTAPTRQPLN
GESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPV
MNETDFLSLMAGYGQTLS
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcaataacttccgtgatcgaacagatgcgtcagcttattcaattgattgcaaagcat
aaccatgcctactatgtcatggatcagccgacaatctcggacagtgaatatgatcattta
tttcatcagttaaaagctttagaagaacaatatccggaacttgtacaagccgactcacca
acaacgaaagtaggtggtcaggcgctttcaaaatttgagagtgtgacgcatgtggtgcca
atgctttcacttggtaatgtatttaaccaagaagatttatttgcatttgcacgccgtgta
gaagagagacttccgaaccagaaagtacaatatgaagttgagttaaaactcgatggtctt
gcgatttcactatggtatgaaaatggtgtactcgttcgcggtgtaacccgtggggatggc
gaaacgggtgaagacattactcaaaatgttaaaaccattcgtaacttacctaaagttctg
cattcagaaaaatatgaaatacctcgtctacttgaagtacgtggtgaagtattgatgcca
aagtctggttttgaaaaactcaatgctgaccaagaagcaaagggagaaaaaaccttcgct
aaccctcgaaatgcagccgcaggaagtttaagacaacttgatccaaatattgctgctgct
cgacctttagcattttatgcgtatgggattgcacagtgtgaaccgaatcatggcttgaca
accatgcatgatagcttgcaatggttaacggaacttgggttccaaattgctgagcgtcag
tacttgtgtaattcaattcaagaagtacagcagcgctatgagcaaattcaacaagagcgt
ccaaacttgcaagttgaaattgatggcatggtggtgaaggttgatgacctaaaacagcaa
cagcagcttggtttcttaagtcgtgaaccacgctgggcaactgcttataaattcccggca
caagctgcattaactacagttgagcagattgactggcaagtagggcgtacagggactttg
acaccagtagcacgcttaaaccctgtttttgtaggtggtgtaactgtttctaatgtaacg
ttgcataatattggggaaattcatcgtctggatgtacgcattggcgatacggtaagtgta
tatcgtacgggtgacgtgatccctaaagtagaaaaagtttggccggagttccgtcctgct
gaagcagaagttgttcatttaccagagtcctgcccagtatgtgcttcgcctgtagtgatg
cctgaaggtgaggctcttgcacgttgttcaggcggtttatattgtgctgcacagcgtatt
gaagccattcgtcactttgtatcgcgtaaagcgatggatatcgagggcttgggagatcgt
tgggtagaatctttattacgtctcgatttacttaaagatgttgctgatatttaccatttg
catgagcacagagaaactctgttgggcatcgaaaaaatgggagaaaagtcagtacagaac
ttaatagatgcgattgaagcaagtaagaaaacaactctagcacgttttatttatgcatta
ggtattcgtggagtaggtgaaacaacggctagaatgttagcaaatacattccagacgctt
gaggcacttaaagctgcgaatgtagaagctttaaagaaaaccccagatgtcggggatatt
acagcagagtggattgctgactttttcttggcaccgcataacattgaagtactcgatcgt
ttaattgtcgcaggaattcattgggatgcgccaacagcaccaacgcgtcagcctttaaat
ggtgaaagctgggtacttacaggtacattagagcaaatgacccgtgatcaggccactcaa
atgctacaagcattaggtgcacgagtaagtgggagtgtttctagcaaaacaaaatgtgta
gttgctggtgagaaggcgggttcaaaattagaaaaagctgcaaagttaggtattcctgtc
atgaatgaaacagatttcttatcactcatggcaggctatgggcaaactttgagctaa
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