Luteitalea pratensis: LuPra_03434
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Entry
LuPra_03434 CDS
T04394
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abac
Luteitalea pratensis
Pathway
abac03030
DNA replication
abac03410
Base excision repair
abac03420
Nucleotide excision repair
abac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LuPra_03434 (ligA)
03410 Base excision repair
LuPra_03434 (ligA)
03420 Nucleotide excision repair
LuPra_03434 (ligA)
03430 Mismatch repair
LuPra_03434 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abac03032
]
LuPra_03434 (ligA)
03400 DNA repair and recombination proteins [BR:
abac03400
]
LuPra_03434 (ligA)
Enzymes [BR:
abac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LuPra_03434 (ligA)
DNA replication proteins [BR:
abac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LuPra_03434 (ligA)
DNA repair and recombination proteins [BR:
abac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LuPra_03434 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LuPra_03434 (ligA)
MMR (mismatch excision repair)
DNA ligase
LuPra_03434 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LuPra_03434 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
AMY10205
UniProt:
A0A143PNP2
LinkDB
All DBs
Position
4167073..4169205
Genome browser
AA seq
710 aa
AA seq
DB search
MAAPADRIDALRAVIRHHEERYYVHDDPEVSDAEFDALVRELRELEAAHPDLVTADSPTQ
RVSGRPAEGFETAVHLRPMLSLDNAYSDEELEAFDERVRKGLGTEGPVHYVAELKIDGLS
IAITYEDGRFARGVTRGDGVIGEDVSSNVRTIQPIPLRLKNAPDGRLEVRGEIYFPRAAF
DRLNGEREAEGAPLFANPRNAAAGTLRNLDPSLVARRGLRAFFYHAVREDNVGSRGDAEA
PTDGLPETHASLMESLSSWGLPVEKHWTRCAGIDAVKTFCASWAETRQQLPFDTDGIVIK
VDRREERERLGFTSKFPRWATAYKFPAQQATTTLLRIEVQVGRTGAVTPLAVLAPVFLAG
STIQYATLHNEDEIRRKDIRPGDEVLLEKGGDVIPKIVKPILSTRPEGLAPFEMPAQCPV
CATALERPEDEVVWRCPNPSCPARLRRSLEHFAGRRAMNIDGLGSALVDKLVALELVRDF
ADLYRLTVEGLADLKFEAKAREGGDEVEQGSARTPTARRFGEKSATALVTQIDNSRRNEL
WRLIFGLGIRHVGERGAQALAEAFGTMQAVAAANVDQLQAVSDIGPVVAASVRRFFDTPA
STHLIARLEAAGLHMGEPVAEGRGPKPLEGRTIVLTGGLATMTRDEAAERLTVLGAKVAG
SVSKKTSLVIAGEDAGSKLARARDLGVPIGDEDTLVHLLATPATWPFDNL
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcccgccgaccgcatcgacgcgctccgtgccgttatccggcaccacgaggag
cgctactacgttcacgacgaccctgaggtctccgacgccgagttcgacgcgctcgtgcgc
gagctgcgcgagctcgaggcggcgcatcccgacctggtcacggctgattcgccgacgcaa
cgcgtctcggggcggcctgccgagggcttcgagacggccgtgcacctccggccgatgctc
agtctcgacaacgcctatagcgacgaggagctcgaagccttcgacgagcgggtccggaaa
ggcctcggcacggaagggccggttcactacgtcgccgagctcaagatcgacggcctgagc
atcgccatcacctacgaggacggccgcttcgcccgcggcgtcacacgcggggacggagtg
atcggcgaggacgtctcgagcaacgtccgcaccatccagccgatccccctgcgcctcaag
aacgcgccggacgggcgcctcgaagtgcgtggcgaaatctacttcccacgcgcggccttc
gatcgcctcaacggcgagcgtgaggccgagggagcgccgctctttgccaatccacgcaac
gccgcggccgggaccctgcgcaacctcgatccctcgctggtggcacggcgcgggctccgc
gccttcttctatcacgcggtccgggaagacaacgtcgggagtcggggagatgcggaggcg
ccgaccgacggactgccggagacgcacgcttcgctgatggagtcgctctcttcgtggggg
ctgccggtcgagaagcactggacgcgctgcgccggcatcgacgccgtgaagacgttctgc
gcctcctgggccgagacgcgccaacaactgccattcgacaccgacggtatcgtcatcaag
gtggaccgccgtgaggaacgggagcgcctcggtttcacgtcgaagttcccgcgctgggcc
acggcctacaagttccctgcgcaacaggccacgacgacactgctgcggatcgaggtgcag
gtgggtcgtaccggggccgtgacgccgctggccgtgctcgcgccggtcttcctggcgggt
tccaccatccagtacgcgacgctccacaacgaagacgagatccggcgcaaggacatccgg
cctggcgatgaagtgctgctcgagaagggcggcgacgtcatccccaagatcgtcaagccg
atcctgtcgacacgacccgaggggctcgcgccgttcgagatgccggcgcagtgtcccgtc
tgtgcgacggcgctcgagcggcccgaggacgaggtcgtgtggcgctgcccgaatccgagt
tgcccggcacgcctgcggcgcagcctcgagcacttcgctggtcgccgcgcgatgaacatc
gacgggctgggctcggcgctcgtcgacaagctggtcgccctcgaactggtccgcgacttc
gccgatctctatcgcctcactgtcgaaggcctcgccgatctgaagttcgaggcgaaggcc
cgggagggtggtgacgaggtcgagcagggaagcgcacgcacgccgacggcgagacggttc
ggcgagaagtcggcgaccgcgctcgtcacacagatcgacaacagccgccgcaacgaactc
tggcgcctcatcttcggcctcggcatccgccacgtcggcgaacgcggcgcgcaggccctc
gcggaggcgttcggcacgatgcaggcggtcgccgcggccaacgtcgaccagttacaggcg
gtatcggacatcggcccggtcgtggccgcctccgtgcgccgcttcttcgacacgccggcg
tcgacgcacctcatcgcgcgtctcgaagccgcgggcctgcacatgggcgagccggtggcc
gaggggcggggcccgaagccgctcgaagggcgcacgatcgtgctgaccggcggactggcg
acgatgacccgcgacgaggcggctgaacggctcacggtgctgggcgccaaggtcgccggg
tcggtcagcaagaagacgtcgctggtgattgccggcgaggatgctggcagcaagctcgcc
agggcacgcgatctcggcgtgccgattggcgacgaagacaccctcgtgcacctgctcgcc
acgccggcgacctggcccttcgacaacctgtag
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