Acinetobacter baumannii D1279779: ABD1_07560
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Entry
ABD1_07560 CDS
T02491
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abad
Acinetobacter baumannii D1279779
Pathway
abad03030
DNA replication
abad03410
Base excision repair
abad03420
Nucleotide excision repair
abad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABD1_07560 (ligA)
03410 Base excision repair
ABD1_07560 (ligA)
03420 Nucleotide excision repair
ABD1_07560 (ligA)
03430 Mismatch repair
ABD1_07560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abad03032
]
ABD1_07560 (ligA)
03400 DNA repair and recombination proteins [BR:
abad03400
]
ABD1_07560 (ligA)
Enzymes [BR:
abad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABD1_07560 (ligA)
DNA replication proteins [BR:
abad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABD1_07560 (ligA)
DNA repair and recombination proteins [BR:
abad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABD1_07560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABD1_07560 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABD1_07560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABD1_07560 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AGH34646
LinkDB
All DBs
Position
848700..850736
Genome browser
AA seq
678 aa
AA seq
DB search
MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP
TTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLPNQKVQYEVELKLDGL
AISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMP
KSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLT
TMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQ
QQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVT
LHNIGEIHRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHL
HEHRETLLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTL
EALKAANVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHWDAPTAPTRQPLN
GESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPV
MNETDFLSLMAGYGQTLS
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcaataacttccgtgatcgaacagatgcgtcagcttattcaattgattgcaaagcat
aaccatgcctactatgtcatggatcagccgacaatctcggacagtgaatacgatcattta
tttcatcagttaaaagctttagaagaacaatatccggaacttgtacaagccgactcacca
acaacgaaagtaggtggtcaagcgctttcaaaatttgagagtgtgacgcatgtggtgcca
atgctttcacttggtaatgtatttaaccaagaagacttatttgcatttgcacgccgtgta
gaagagcgacttccgaaccagaaagtacaatatgaagttgagttaaaactcgatggcctt
gcgatttcactatggtatgaaaatggtgtgctcgttcgcggtgtaacccgtggggatggc
gaaacgggtgaagatattactcaaaatgttaaaaccattcgtaacttacctaaagttctg
cattcagaaaaatatgaaatacctcgtctacttgaagtacgtggcgaagtactgatgcca
aagtctggttttgaaaaactcaatgctgaccaagaagcaaagggagaaaaaaccttcgct
aaccctcgaaatgcagccgcaggaagtttaagacaacttgatccaaatattgctgctgct
cgacctttggcattttatgcgtatggaattgcgcagtgtgaaccgaatcatggcttgaca
accatgcatgatagcttgcaatggttaacggaacttgggttccaaattgctgagcgtcag
tacttgtgtaattcaattcaagaagtacagcagcgctatgagcaaattcagcaagaacgt
ccaaacttgcaagttgaaattgatggcatggtggtgaaggttgatgacctaaaacagcaa
cagcagcttggtttcttaagtcgtgaaccacgctgggcaactgcttataaattcccggca
caagctgcattaactacagttgagcagattgactggcaagtagggcgtacagggactttg
acccctgtagcacgcttaaaccctgtttttgtgggtggtgtgactgtttctaatgtaacg
ttgcataatattggggaaattcatcgtctagatgtacgcattggcgatacggtaagtgta
tatcgtacgggtgacgtaattcctaaagtagaaaaagtttggccggagttccgtcctgct
gaagcagaagttgttcatttaccagagtcctgcccagtatgtgcttcgcctgtagtgatg
cctgaaggtgaggctctcgcacgttgttcaggcggtttatattgtgccgcacagcgtatt
gaagccattcgtcactttgtatcgcgtaaagcgatggatatcgagggcttgggagatcgt
tgggtagaatctttattacgtctcgatttacttaaagatgttgctgatatttaccatttg
catgagcacagagaaactctgttgggcatcgaaaaaatgggagaaaagtcagtacagaac
ttaatagatgcgattgaagcaagtaagaaaacaactctagcacgttttatttatgcatta
ggtattcgtggagtaggtgaaacaacggctagaatgttagcaaatacattccagacgctt
gaggctcttaaagctgcgaatgtagaagctttaaagaaaaccccagacgtaggggatatt
acagcagagtggattgctgactttttcttggcaccgcataacattgaagtactcgatcgt
ttaattgctgcaggaattcattgggatgcgccaacagcaccaacgcgtcagcctttaaat
ggtgaaagctgggtacttacaggtacattagagcaaatgacccgtgatcaggccactcaa
atgctacaagcattaggtgcacgagtaagtgggagtgtttctagcaaaacaaaatgtgta
gttgctggtgagaaggcgggttcaaaattagaaaaagctgcaaagttaggtattcctgtc
atgaatgaaacagatttcttatcactcatggcaggctatgggcaaactttgagctaa
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integrated database retrieval system
