Suicoccus acidiformans: CL176_01525
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Entry
CL176_01525 CDS
T05652
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abae
Suicoccus acidiformans
Pathway
abae03030
DNA replication
abae03410
Base excision repair
abae03420
Nucleotide excision repair
abae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CL176_01525 (ligA)
03410 Base excision repair
CL176_01525 (ligA)
03420 Nucleotide excision repair
CL176_01525 (ligA)
03430 Mismatch repair
CL176_01525 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abae03032
]
CL176_01525 (ligA)
03400 DNA repair and recombination proteins [BR:
abae03400
]
CL176_01525 (ligA)
Enzymes [BR:
abae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CL176_01525 (ligA)
DNA replication proteins [BR:
abae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CL176_01525 (ligA)
DNA repair and recombination proteins [BR:
abae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CL176_01525 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CL176_01525 (ligA)
MMR (mismatch excision repair)
DNA ligase
CL176_01525 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CL176_01525 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
RsgI_N
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AXY24801
UniProt:
A0A347WI94
LinkDB
All DBs
Position
308021..310045
Genome browser
AA seq
674 aa
AA seq
DB search
MAQNAQQDIQARMEQLKDTLNDHAYRYYVLDEPTIDDATYDALYRELVELEQQYPEFLAS
DSPTQRVGDVLLEGFQKVPHAQAMYSLGNAFNEAEVTEFIQRVQSQVDGPVEFMCECKID
GLAVALTYEEGRFVRGATRGDGQIGEEITANLRTIKSLPLKLREPISSEIRGEAYMPKDV
FHRLNELREQDGQAPFANPRNAAAGGLRQLDPKAAAERELNIFLYGAVQTASFQPESQAD
LFEQLDNLGLRTNPLRRLCRDEAEVISYIQEVAATRQDLPYEIDGVVVKVNNMAQQAELG
YTAKAPRWAIAYKFQAEVAETELLEVEWTVGRTGVVTPTAVMEPVLLAGTTVQRASLHNV
DLIQALDVRIGDTVRIQKAGDIIPEIISVDLEQRAKEAPALPIPEECPVCASELVRLDDE
VALRCINTACPAQQLAQLSHFTSRNAMNIVGIGEKVIQNMLKHNLVENVSDFYYLEQDDF
LQLDNTKEKSAQKYYQAIQTSKENSLERLIVGLGIRHVGVRAARLLAQRFETIEAIMEAS
QADLLEVEGMGAIITQSVQAYFALEETQVLIERLQQAGVNTTYTGPRPAKVSELDNVWSG
KTVVLTGTMETYTRSEAKRVLENLGAKVTGSVSKNTDYLVAGEAAGSKLTKAQDLGIKIL
DEAAFLERLNGGEH
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggcacagaatgcacagcaagatattcaagcgcggatggagcagttgaaagatacgctc
aatgaccacgcataccgttattatgttcttgatgaaccgacgattgatgatgcgacctat
gacgccttgtatcgtgaattagttgaattggaacagcagtatccggaatttctcgcaagc
gattcaccgacgcaacgtgtgggtgatgtcctcttggaaggtttccagaaagtccctcat
gctcaagccatgtacagcttgggcaatgcttttaatgaagctgaggtgacggaatttatt
cagcgggtccaatcgcaagtggacggcccggttgaatttatgtgcgagtgtaaaattgac
ggcttagccgttgccttaacctatgaagagggacgctttgtacggggagccacccggggt
gacggccaaattggtgaagaaatcacagccaatttacgcaccattaaatcacttcccttg
aaacttcgcgagccaatctcatcagaaatacgtggggaagcgtatatgccgaaagatgtc
tttcaccgcttaaatgagctccgggagcaagatgggcaggcaccctttgcgaatccacga
aatgcagcagctggtggcttgcgccagttagaccctaaggctgcagccgagcgggagtta
aacatcttcctctatggggcagttcaaacggcgtctttccagccagagtcgcaggcagat
ttatttgaacaactggataaccttggcttacggacgaatcctttgcgccgtttatgccgt
gacgaagcggaagttatctcttatattcaagaagttgcagcgacgcgtcaggacttacct
tatgaaatcgacggagtggtggttaaagtcaataatatggcccagcaagcagaactaggt
tacactgccaaagctcctcgttgggcgattgcctacaaattccaagcggaagtagcggaa
acggagctacttgaagtggagtggacggtaggccgaacaggtgtggttactcctacagcc
gtgatggagccagtgctactagctggaacaaccgtacagcgggcttccttgcataatgtt
gatttaattcaagctttggatgtgcgcatcggtgacacagtgcgtatccaaaaggctggt
gatattatcccggaaattatttcggttgatttagagcaacgagctaaagaggcgccagcc
ttaccgattcctgaagagtgtccagtatgtgcgagtgaacttgtacgtttagacgatgaa
gtcgccttgcgctgtattaatacggcttgcccggcccagcagttagcccagttatcacat
ttcacctcccgcaatgcgatgaatattgtagggattggtgagaaagtaatccagaatatg
cttaaacataatttggtagagaatgtgagtgacttctattacttggagcaagatgatttt
cttcaattggataatacgaaggagaaatctgcccagaaatattatcaggccatccaaact
tccaaggagaattccttggaaaggctgattgtgggcctaggaattcgccacgttggggtc
agagcggccaggcttttggcccagcgttttgagacgattgaggcgattatggaagcttct
caagcagaccttttagaagttgaaggtatgggggcaataattacccaatcggtgcaggca
tatttcgccctagaagaaacgcaggtcttgattgaacgcctgcagcaggcgggggttaat
acgacttatacgggtccgcgtccagccaaagtaagcgagctggataatgtctggtctggg
aagacagtcgttcttaccggcacgatggaaacctatacacgcagtgaggccaagcgggtg
ttggaaaacttgggggccaaagtaacaggcagtgtatccaaaaatacggattacctggtg
gccggtgaagcagcggggagtaagttgactaaggcccaagatttaggtattaagatttta
gatgaagcggcgttccttgaacgcttaaatggaggagagcattga
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integrated database retrieval system
