Actinobacteria bacterium: IMCC26256_111920
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Entry
IMCC26256_111920 CDS
T03963
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abai
Actinobacteria bacterium
Pathway
abai03030
DNA replication
abai03410
Base excision repair
abai03420
Nucleotide excision repair
abai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IMCC26256_111920
03410 Base excision repair
IMCC26256_111920
03420 Nucleotide excision repair
IMCC26256_111920
03430 Mismatch repair
IMCC26256_111920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abai03032
]
IMCC26256_111920
03400 DNA repair and recombination proteins [BR:
abai03400
]
IMCC26256_111920
Enzymes [BR:
abai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IMCC26256_111920
DNA replication proteins [BR:
abai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IMCC26256_111920
DNA repair and recombination proteins [BR:
abai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IMCC26256_111920
NER (nucleotide excision repair)
GGR (global genome repair) factors
IMCC26256_111920
MMR (mismatch excision repair)
DNA ligase
IMCC26256_111920
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IMCC26256_111920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
Auto_anti-p27
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AKL74188
LinkDB
All DBs
Position
complement(2025411..2027537)
Genome browser
AA seq
708 aa
AA seq
DB search
MSTNPPTSPPKGVEPLAARAYELRASIRHHNERYYGNDEPEISDSAYDALVRELIEIETD
HPELLTQDSPTQTPGAAAGQSPFSPVRHIQPMLSLDNAFDNDGIAAWVVRLEKLVDTPIA
YVGEPKLDGLAISLLYENGRLVRCATRGDGETGEDVTQNVMTIADIPHVLTGEDIPTSME
VRGEAFMPLEVFEALRAERLARIDAGEKVSGPEFKNPRNTAAGSLRQLDSKVTASRRLSF
YAYQIGAQEGGKEHKTHQALLDWLRGAGLPINPRIEPLKDLADIQRFCASVEEHRHDLGY
EIDGAVIKVDDLAQRLEMGFTSRAPRWALAVKFAPEERHTKLIDIKVSIGRTGRVTPFAE
LEPVFVGGSTVAVATLHNEDDITRRDVRPGDTVIVRKAGDVIPEIVGAVLAERDPSSLPW
SFPRLCPTCAAPLVRLEGEANTYCVNSECEAQRLQRIAHFASRGALDLEGLGEERVQWII
DAGLLKDVADIFTLTVNSLAQVTGPPKGKRKGIRIGEKAATKTMVSIDAAKQAPIARILT
GLGIQHVGPTVAEALTRSIRDLDEIANASVDVLTEIDGVGPIIAESLVSYFSVDGNRDVL
NRLRSAGVILRAPEEDQREVLPQTLEGVSVVVTGTIDGFSRESAEDAITSRGGKAVGSVS
KKTSFVVVGENPGSKAAKAESLGVPILDGEGFVRLLEEGPGAFSADAE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaccaatcctccaacgagccctcccaaaggagtcgaacccttagcggcacgtgct
tacgagttgcgcgcctcaattcgtcatcacaatgagcgctattacggcaacgacgagcct
gagatttctgactccgcttacgacgcactcgttagagagttaatcgagattgagactgat
catccggaactcctaacgcaagactcaccaacccagactcctggtgctgcggctgggcag
tcgccgtttagccctgttcgccacatccagccgatgctctcgttggacaacgcattcgac
aatgacggaattgctgcgtgggtagtgcgcttagagaagctggtcgacaccccgattgca
tatgttggagagcccaaactcgatgggctagccatctcattgctatatgagaatggtcgc
ctagtgcgctgcgctactcgcggtgatggcgagacaggtgaggacgtcacgcagaatgtg
atgacaatcgcggatattccacatgtgttgaccggcgaggacataccaacatcgatggag
gttcgcggcgaagcctttatgcccctcgaggtatttgaggcgttgagagcagaacgttta
gctcgtattgacgcaggagagaaggtctccggaccagagtttaagaatccgcgcaacacc
gccgccggatcgcttcgccaactcgactcaaaggtaactgcatctcgccggctctccttc
tacgcttatcaaattggtgctcaagagggcggcaaggagcataaaacgcatcaggctctt
cttgattggttgcgtggcgcagggctaccgatcaacccgcgcatcgagccactaaaggac
ctcgccgatattcagcgcttctgtgcctccgtggaggagcatcgccatgaccttggttat
gagattgatggcgctgtaattaaagtcgatgacttagcgcagcgactcgagatggggttc
accagccgtgcacctcggtgggcgctcgcagttaaattcgctccagaggaacgacacaca
aaacttatcgacatcaaagtaagcatcggtcggactggtcgggttactcctttcgctgaa
ttggagcctgtatttgtaggtggctcaaccgttgccgtcgcaacactccataatgaagac
gacatcacgcgcagagatgtaaggcccggtgacaccgtgatagtccgaaaggccggcgat
gtcatacctgagattgtcggtgccgtactcgccgagcgcgacccgtcttctctgccctgg
agtttcccgagactctgcccaacctgcgctgctccgctggtacgtctcgagggtgaggcg
aatacctactgtgtgaatagtgagtgtgaggctcagcgcctgcagcgcattgcgcacttc
gcaagccgaggcgcacttgatcttgaggggctcggcgaggagcgcgtgcagtggatcatc
gatgctggcctcctcaaagatgtagcggacatattcacactcaccgtcaattctctcgct
caggtaacaggtccgcctaaggggaaacgcaagggcattcgcatcggcgagaaagcagct
acgaagacgatggtgtcgatcgatgcagcgaagcaggccccgattgcaagaatccttacc
ggtctcggaatacagcatgttggcccaactgttgcagaggcgctaacccgatcaattcgc
gatctcgacgagattgctaacgcctctgttgatgtgctgacagagatcgatggcgttggc
ccgatcattgctgagagccttgttagttacttctctgtagatgggaaccgtgatgttctc
aaccgacttcggtcggcaggcgtaatactgcgcgcacccgaggaggatcaacgcgaggtt
ctgcctcagacgcttgagggtgtctcggtggtagtaactggcacgatcgatggatttagt
cgtgagagtgctgaggacgccatcacctctcgcggcggcaaggcagtggggagtgtctca
aagaagacatccttcgttgttgttggagagaacccggggagcaaggctgccaaggccgag
tccctcggggttccgatcctcgatggagaaggattcgttcgactcctcgaagaaggtccg
ggagcgtttagtgcggatgcagagtga
DBGET
integrated database retrieval system
