Amycolatopsis bartoniae: AMYBAR_001432
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Entry
AMYBAR_001432 CDS
T10755
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abar Amycolatopsis bartoniae
Pathway
abar03030
DNA replication
abar03410
Base excision repair
abar03420
Nucleotide excision repair
abar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMYBAR_001432 (ligA)
03410 Base excision repair
AMYBAR_001432 (ligA)
03420 Nucleotide excision repair
AMYBAR_001432 (ligA)
03430 Mismatch repair
AMYBAR_001432 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abar03032
]
AMYBAR_001432 (ligA)
03400 DNA repair and recombination proteins [BR:
abar03400
]
AMYBAR_001432 (ligA)
Enzymes [BR:
abar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AMYBAR_001432 (ligA)
DNA replication proteins [BR:
abar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AMYBAR_001432 (ligA)
DNA repair and recombination proteins [BR:
abar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AMYBAR_001432 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMYBAR_001432 (ligA)
MMR (mismatch excision repair)
DNA ligase
AMYBAR_001432 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMYBAR_001432 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Auto_anti-p27
HHH_8
Motif
Other DBs
NCBI-ProteinID:
XMG32575
LinkDB
All DBs
Position
1467559..1469688
Genome browser
AA seq
709 aa
AA seq
DB search
MSEVPAEAQDVTEVPADVRERHGALADEVRGHQFRYYVLDSPTISDGQFDELLRRLQELE
EQYPGLATPDSPTQNVGGTFSTEFAAYDHLERMLSLDNVFDRDEMCAWMERVEREVGSTQ
YLAELKIDGLAINLLYERGRLTRALTRGDGRTGEDVTLNVRTLDQVPDELTGTDEFPVPA
VVEVRGEVFFRVEDFLELNAKLVEAGKPPFANPRNTAAGSLRQKDPRVTRSRRLRLICHG
LGKREGFEPRRQSEAYDALTAWGLPVSPHTKVFTSSKEVLDHIDYWGEHRHDAEHEIDGI
VIKVDQVSLQRRLGTTSRAPRWAIAYKYPPEEAITKLLDIQVNVGRTGRVTPFAVMEPVK
VAGSTVGMATLHNASEVKRKGVLIGDRVVIRKAGDVIPEVLGPVADARTGDEREFVMPTR
CPECGTPLAHQKEGDVDIRCPNARSCPAQLRERLFHLAGRGAFDIEVLGYEAATALLESG
VVVDEGDIFDLDEEKLEQVELFRTKAGGLSANARKLLANLDTAKDRPLWKVLVALSIRHV
GPTAAQALAREFGSLEAIEEATEEQLADVDGVGPTIAAAVKEWFAVDWHREVVEKWRRAG
VRMAEERDESIPRNLEGLSIVVTGSLTRFSRDEAKESIMSRGGKAAGSVSKKTAFVVVGD
APGSKYDKAVQLKVPVLDEDGFEVLLTQGPEAAAEVALPAGEEEAEAGE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaagttccagcagaagcccaggacgtgaccgaggtgcccgccgacgtgcgggag
cggcacggcgcgctcgcggacgaggtccgcggtcaccagttccggtactacgtgctggac
tcgcccacgatctccgacggccagttcgacgagctgctgcggcggctgcaggagctggag
gagcagtacccgggcctggccacgcccgactcgccgacgcagaacgtgggcggcacgttc
tccaccgagttcgcggcgtacgaccacctcgaacgcatgctcagcctcgacaacgtgttc
gaccgcgacgagatgtgcgcgtggatggagcgcgtggagcgcgaggtcggctccacgcag
tacctggccgagctgaagatcgacgggctggccatcaacctgctgtacgagcggggcagg
ctcacgcgcgcgctcacccggggggacgggcgcacgggcgaggacgtcacgctgaacgtc
cgcacgctcgaccaggtgccggacgagctgacgggcaccgacgagttcccggtgcccgcg
gtcgtcgaggtgcgcggcgaggtgttcttccgggtcgaggacttcctggagctcaacgcg
aagctcgtcgaggcgggcaagccgccgttcgccaacccgcgcaacacggcggcgggttcg
ttgcggcagaaggatccccgcgtcacgcgcagccgcaggctccggctcatctgccacggg
ctgggcaagcgggagggcttcgagccgcggcggcagtcggaggcgtacgacgcgctgacg
gcgtggggcctgccggtttccccgcacaccaaggtgttcaccagctcgaaggaggtgctc
gaccacatcgactactggggtgagcaccggcacgacgccgagcacgagatcgacggcatc
gtgatcaaggtcgaccaggtgtcgctgcagcggcggctgggcaccacgtcgcgcgcgccg
cggtgggccatcgcgtacaagtacccgccggaggaggcgatcacgaagctgctggacatc
caggtcaacgtgggccgcaccgggcgcgtcacgccgttcgcggtgatggagccggtgaag
gtggccgggtccacggtcgggatggccacgctgcacaacgcctcggaggtcaagcgcaag
ggcgtcctgatcggtgaccgggtggtgatccgcaaggcgggtgacgtgatcccggaggtg
ctcggcccggtcgccgacgcccgcacgggtgacgagcgggagttcgtcatgcccacgcgc
tgcccggagtgcggcacgccgctggcgcaccagaaggagggtgacgtcgacatccgctgc
ccgaacgcgcggtcgtgcccggcgcagctgcgggagcggttgttccacctggcggggcgg
ggtgcgttcgacatcgaggtgctgggctacgaggcggccacggcgctgctggagtccggg
gtggtggtcgacgagggcgacatcttcgacctcgacgaggagaagctggagcaggtggag
ctgttccgcaccaaggcgggcgggttgtcggccaacgcgcggaagctgctggccaacctg
gacacggcgaaggaccgtccactgtggaaggtgctggtggcgttgtcgatccggcacgtg
ggccccacggcggcgcaggcgctggcgcgggagttcggttcgctggaggccatcgaggag
gcgacggaggagcagctggccgatgtcgacggcgtgggccccaccatcgcggcggcggtg
aaggagtggttcgcggtcgactggcaccgcgaggtggtggagaagtggcgccgcgccggg
gtgcggatggcggaggagcgggacgagtcgatcccgcggaacctggagggtctgtccatt
gtggtgacgggctcgctgacgcggttctcccgggacgaggccaaggagtcgatcatgtcg
cgcggcggcaaggcggcgggctcggtgtcgaagaagacggccttcgtggtggtcggcgac
gcccccggctcgaagtacgacaaggcggtgcagctgaaggtcccggtcctcgacgaggac
ggtttcgaggtgctgctcacgcagggcccggaagccgcggcggaggtggccttaccggca
ggagaggaagaagccgaggctggtgagtga
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