Brevefilum fermentans: CFX1CAM_0839
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Entry
CFX1CAM_0839 CDS
T04881
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abat
Brevefilum fermentans
Pathway
abat03030
DNA replication
abat03410
Base excision repair
abat03420
Nucleotide excision repair
abat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFX1CAM_0839 (ligA)
03410 Base excision repair
CFX1CAM_0839 (ligA)
03420 Nucleotide excision repair
CFX1CAM_0839 (ligA)
03430 Mismatch repair
CFX1CAM_0839 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abat03032
]
CFX1CAM_0839 (ligA)
03400 DNA repair and recombination proteins [BR:
abat03400
]
CFX1CAM_0839 (ligA)
Enzymes [BR:
abat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFX1CAM_0839 (ligA)
DNA replication proteins [BR:
abat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFX1CAM_0839 (ligA)
DNA repair and recombination proteins [BR:
abat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFX1CAM_0839 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFX1CAM_0839 (ligA)
MMR (mismatch excision repair)
DNA ligase
CFX1CAM_0839 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFX1CAM_0839 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH_8
DUF4796_N
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
SMX53904
UniProt:
A0A1Y6K2P5
LinkDB
All DBs
Position
I:941596..943623
Genome browser
AA seq
675 aa
AA seq
DB search
MTPNDLKAEYQALQAEIHYHNYRYHVLNDPVISDPEFDLKLKRLNAIEAAHPEWVTPDSP
SQRAGAEPLEQFTKVVHPAPILSLANAFNGEDLRDWLARLTRLDARAEKADFVVEPKLDG
LTVVLHYRNGSFVQGATRGNGEVGEDITENLRTIKALPLHIPVSADGPRVPTELVVRGEA
LITKADFENLNRRLEAEGQKTYLNPRNTAAGSLRQLDSRITAQRPLTLLVYAIVHHEGGD
IPTTQWGTLNYLRELGFPVSTASRHCTELEEAIQFCLETDPNAFPYEVDGMVIKINDLIL
SEQLGVVGKDPRGAIAYKFPAQEVTTQLNDIGVNVGRTGVITPYAILEPVEIGGVIVKQA
TLHNFDFIKEKDIRVGDRVLVKRAGEVIPYVIGPIVDVRSGDEQPYRVPQNCPSCGEPIT
NPAGEVAYYCTNSACPAQLVRNLEHFVSRGAMDIVGLGINVGEQLINAGLVKDIADLYRL
KKSDLLKLDGFADKKAENLLAAITASKAQPLERLITGLGIRGVGEVAAQALARHFSDLDA
LGHATQEEIEAIEGFGPNMAASIVEWFSSHENQVVLSKLKESGVWPRAESERVAGQQPLA
GLTFVITGTLPTLSRSDAKKLIESRGGKVTGSVSSKTDFLVLGADPGSKLDQARQRGIAT
LSEDELQQLIKSRSI
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccaatgatctcaaggctgaataccaggctttacaggctgaaattcattatcat
aattatcgttaccacgtgctgaacgaccctgtaatcagcgatcctgaatttgacttaaaa
ctgaaacgtctcaacgccatcgaagcagcgcatccggaatgggtcacacctgattcacct
tcccagcgggctggagctgaaccgctggaacagttcacaaaggtggtccacccggcgccg
atcctcagcctggcgaatgcattcaacggagaggacctgcgcgactggcttgcgcgcctg
acccgcctggatgctcgagcggagaaggcggattttgtcgtggagcccaagttggatggg
ctgaccgttgtgcttcactaccgcaatggcagttttgttcagggtgcgacgcgcgggaat
ggtgaagttggggaggatattaccgagaatctgcgcaccattaaagcgctgccgctgcat
attccggtttcggctgatggaccccgggttccaactgagctggtcgtgcgcggagaagcg
ctgatcaccaaagcggattttgaaaacctcaaccgcaggctggaagctgaggggcagaaa
acgtacctcaacccgcgcaacacggccgccggttcattgcggcaactggattcacggatc
acggcgcaacgaccgctgactttactggtgtatgcaattgttcaccatgaagggggagac
attcccacaacccaatggggcacactcaattatctgcgtgaactgggcttcccggtgtcg
actgcctcgcgtcattgcacggagttagaggaagctatacaattctgtctggaaaccgac
cccaacgccttcccctacgaggtggatgggatggtgatcaaaatcaacgacctgatccta
tctgagcaattaggcgttgtgggaaaagacccacgcggtgcgattgcttataaattccct
gcacaagaagtgaccacgcagttgaacgacattggtgtcaatgtaggtcgtacgggggtg
attacaccctatgccattttggagcctgtagagattggcggggtgattgttaaacaggcg
acactgcacaattttgactttattaaggaaaaggacatccgggtcggtgatcgggtgctg
gtcaagcgggctggtgaggtgatcccgtatgtgattggcccgatcgtcgatgtccgcagt
ggtgacgagcagccttaccgggtaccacaaaactgcccttcctgtggtgagccgatcaca
aatcctgccggtgaggtggcgtattactgcacgaacagcgcctgtccggcacaactggtg
cgcaacctggagcatttcgtctcacgcggcgcgatggatatcgtcgggctggggatcaat
gtcggtgaacagctcatcaacgccgggttggtcaaagatattgctgacctttatcgtctg
aagaaaagcgacctgcttaaattagacggttttgccgataaaaaagccgaaaacttgctc
gccgcaatcacggcttctaaggcgcaacccctggagcgtctgatcaccggcctgggcatt
cgcggtgtgggagaggtggctgcgcaggcgcttgccaggcacttttccgatctggatgcg
cttggtcatgccactcaggaagagatcgaagccattgagggttttgggcccaatatggct
gcttcgatcgtggaatggttcagttctcatgaaaatcaggttgtactttcgaaattaaaa
gaaagtggggtgtggccgcgcgccgaatctgaacgtgttgccgggcaacaacccctggct
ggactcacctttgtcatcaccggcacgctgcccacgctctcgcgcagcgatgcgaaaaag
ctgatcgaatcaaggggtgggaaagtcaccggcagcgtcagcagtaaaaccgatttcctt
gtcctgggcgcagacccgggttcgaaactggatcaagcccggcagcggggtattgccacg
ctttcggaagacgaattgcagcagctaatcaaaagccgctcgatctga
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