Georhizobium profundi: D5400_08395
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Entry
D5400_08395 CDS
T05798
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abaw
Georhizobium profundi
Pathway
abaw03030
DNA replication
abaw03410
Base excision repair
abaw03420
Nucleotide excision repair
abaw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D5400_08395 (ligA)
03410 Base excision repair
D5400_08395 (ligA)
03420 Nucleotide excision repair
D5400_08395 (ligA)
03430 Mismatch repair
D5400_08395 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abaw03032
]
D5400_08395 (ligA)
03400 DNA repair and recombination proteins [BR:
abaw03400
]
D5400_08395 (ligA)
Enzymes [BR:
abaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D5400_08395 (ligA)
DNA replication proteins [BR:
abaw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D5400_08395 (ligA)
DNA repair and recombination proteins [BR:
abaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D5400_08395 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D5400_08395 (ligA)
MMR (mismatch excision repair)
DNA ligase
D5400_08395 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D5400_08395 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
PTCB-BRCT
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AZN71284
UniProt:
A0A3S9B309
LinkDB
All DBs
Position
1790486..1792615
Genome browser
AA seq
709 aa
AA seq
DB search
MPTSFDPNVRKTPVDKMDETEAAELLQSISAELAEHDKRYHQEDAPVISDADYDALKQRY
LAIEAAFPHLKPVEAPSDKVGAEAASGFGKVVHRVGMLSLDNAFSDEDVSDFVERVRRFL
RIGADTELTFTAEPKIDGLSLSLRYEDGELVTAATRGNGAVGENVTANARTIKDIPTTLP
KGAPSVLEVRGEVYMTRDDFVALNQRQAELGRPTYVNPRNTAAGSLRQLDASLTAERSLK
FFAYAWGEVLPGLPADTQYAMVETLADYGFHTNDLMRRLSTVEDLLEHYHAIERVRAELP
YDIDGVVYKVDEIALQQRLGFVSRSPRWAIAHKFPAEKAFTILNAIDIQVGRTGALTPVA
RLEPVTVGGVVVTNATLHNAEEIARLGVKIGDTVEIQRAGDVIPQVLRVEKSPEDAVAFE
FPTICPCHLKTPIVREETAGGVEGVVRRCSGEFACPYQRKEHLKHFVSRKAFDIDGLGEK
QIEYFFDEETLFVRQPADIFTLKARDAAEDLRKLKNREGYGATSAQKLFDAIEARRTVPL
ERLIFSLGIRHVGESTAKTLARAYGNWDGFQQAAHAVAAGDAQAREEMDALDDIGPAVID
AVGRFFGEAHNVAMVDALVAELTVEEAEKPQSDSPVAGKTVVFTGALERMTRDEAKAMAE
RLGAKVAGSVSAKTDLLVAGPGAGSKLKKAQELGVETTDEDGWFTLIGA
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgccgacctcgttcgatcccaatgtccgcaagaccccggtcgacaagatggacgaaacc
gaggctgccgaacttctccaaagcatctcggccgagcttgccgagcacgacaagcgctat
caccaggaagatgccccggtcatctcggatgcggattacgatgcgctgaagcagcgctat
ctcgcaatcgaagctgcttttccgcatctcaagcccgtcgaggcgccttccgacaaggtg
ggcgcggaggcggcatcgggcttcggcaaggtcgtccaccgcgtcggcatgctgtcgctc
gacaatgcgttttccgacgaggacgtgtccgatttcgtcgaacgggtgcggcgattcctg
cgcatcggtgccgacaccgaactgaccttcacggccgagccgaagatcgatggcctgtcg
ctctcactgcgctacgaagacggtgagctggtcacggctgccacgcgcggcaacggtgcc
gttggcgaaaacgtcacggccaatgcccgcacgatcaaggacatccccactacgctgcca
aaaggcgcgccgtccgtgctcgaagtgcgtggcgaggtctatatgacgcgcgatgatttt
gtcgcgctcaaccagcgccaggcggaactcggcaggccgacctacgtcaatccgcgcaac
acggctgccgggtcgctgcgccagctggatgcgtcgcttacggccgagcggtcgctcaaa
ttcttcgcctatgcctggggcgaggtgctgcccgggctgccagccgatacccagtatgcc
atggtcgaaacactggccgactatggcttccacaccaacgatctgatgcgacggctctcc
accgtcgaggacctgctggagcactatcacgccatagagcgggtgcgcgccgaactgccc
tatgacatcgacggcgtcgtctacaaggtggacgagatcgcgctgcaacagcggcttggc
ttcgtgtcacgctcgccgcgctgggcgatcgcgcacaaatttccggccgagaaggccttc
acgatcctcaacgccatcgacatccaggtcggccgcaccggcgcgctgacgccggtcgca
cggttggaaccggtcaccgtcggcggcgtggtcgtgacaaacgcgacgctccacaatgcg
gaagagatcgcccggctcggcgtcaagatcggcgacacggtcgagatccaacgggccggc
gacgtcatcccgcaggtgttgcgggtcgagaagagcccggaagacgcggtggcattcgag
tttccgaccatttgcccctgtcacctgaagacgccgatcgtgcgcgaagagacggctggc
ggcgtcgagggcgtggtgcgccggtgttcgggcgaatttgcctgtccctatcagcgcaag
gagcatctgaagcacttcgtgtcgcgcaaggcgttcgacatcgatggcctcggcgagaag
cagatcgagtatttcttcgatgaggagacgctcttcgttcgccagcctgcggacatcttc
acgctgaaggcgcgtgatgctgccgaagatctgcgcaagctcaagaaccgcgaaggctat
ggcgccacatcggcgcagaagttgttcgatgcgatcgaagcgcgccgcacggtgccgctc
gagcggctgatcttctcgcttggcatccggcatgtgggggaatcgaccgcgaagacgctc
gcgcgcgcttacggaaactgggacgggttccagcaggccgcgcacgcggttgcggcaggg
gacgcgcaggcacgcgaagagatggacgctctggacgatatcggccccgccgtcatcgac
gccgtcggccgctttttcggcgaggcgcacaatgtcgcgatggtcgacgcgctcgtcgcg
gaactcaccgtggaagaggcagagaagccgcaaagcgattctcctgttgccggcaagaca
gtggtcttcacgggtgctctggagcggatgacgcgcgacgaggccaaggcgatggccgaa
cggctcggcgccaaagtcgccggatcggtctccgcgaaaaccgatcttctggtggcgggc
ccgggcgctggatcgaagctgaaaaaggcgcaggaactgggcgtagagacgaccgacgag
gatggctggttcacgctgatcggcgcctaa
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