Acinetobacter bereziniae: BSR55_18170
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Entry
BSR55_18170 CDS
T06609
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aber
Acinetobacter bereziniae
Pathway
aber03030
DNA replication
aber03410
Base excision repair
aber03420
Nucleotide excision repair
aber03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aber00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BSR55_18170 (ligA)
03410 Base excision repair
BSR55_18170 (ligA)
03420 Nucleotide excision repair
BSR55_18170 (ligA)
03430 Mismatch repair
BSR55_18170 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aber03032
]
BSR55_18170 (ligA)
03400 DNA repair and recombination proteins [BR:
aber03400
]
BSR55_18170 (ligA)
Enzymes [BR:
aber01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BSR55_18170 (ligA)
DNA replication proteins [BR:
aber03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BSR55_18170 (ligA)
DNA repair and recombination proteins [BR:
aber03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BSR55_18170 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSR55_18170 (ligA)
MMR (mismatch excision repair)
DNA ligase
BSR55_18170 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BSR55_18170 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ATZ65115
LinkDB
All DBs
Position
complement(3860225..3862255)
Genome browser
AA seq
676 aa
AA seq
DB search
MENNPVVTQMRQLIQLIAKHNHAYYVMDQPSIEDSEYDQLFHQLKALEQQYPDLVQADSP
VNKVGGKPLAKFETITHTVPMLSLGNVFNQEELFAFARRIEERLPNQKIQYDVELKFDGL
AISLWYENGVLTRGVTRGDGETGEVITQNVKTIRNLPKVLSSDKVAVPRLLEVRGEVLMP
KAGFERLNAENEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPNHGLS
SMSASLEWLTNFGFAVGERHFICDSIQEVQEKYQQINQERPNLAVEIDGMVIKVDDLQQQ
QKLGFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNVT
LHNIGEIHRLDVRIGDTVSVYRSGDVIPKVEKVWLEFRPDNVVEVHLPENCPVCSSPVVM
PEGEALARCSGGLYCSAQRIEAIRHFVSRKAMDIEGLGDRWVESLLHLDLLKDVADIYHL
HEHREQLLTIEKMGEKSVQNLLDAIENSKKTTLAAFIYALGIRGVGETTARMLANTFQTF
DAIRHADLEALKKTPDVGEITAEWIVDFFQASHNLEVIDRLLAAGIHWDAPIAPTRQPLN
GESWVITGTLATMGRDDATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAEKLGIPV
LDEQAFLALMADYGQA
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataatcctgtcgtgacgcaaatgcgtcaattgattcagctcatagccaaacat
aaccatgcttattatgtgatggatcaacccagtattgaagacagtgaatatgatcagcta
tttcaccaactcaaagcattagaacagcaatatccagacttagttcaggcagatagtcct
gtgaataaagtcggaggtaaaccgctggctaaatttgaaaccataactcataccgtacca
atgttgtcattgggcaatgtgtttaatcaagaagaactgtttgcttttgcccgccgtatt
gaggaacgcttacccaaccagaaaattcaatatgatgtggagttgaaattcgatggattg
gcgatttcactttggtatgaaaacggtgtgttgactcgtggtgtaacccgtggggacggt
gaaacaggcgaagtgattactcaaaatgtcaaaacgattcgcaatctacccaaagtgttg
tcttcggacaaagttgcagtgcctcgtttactagaagttcgtggcgaagtgctgatgcct
aaagctggttttgaacgattgaatgctgagaatgaagccaaaggtgaaaaaacatttgcc
aatcctcgcaatgccgcagcaggaagtttgcgacagctagatccaaatattgctgcatca
cgacctttggcattctatgcgtatgggattgcacagtgcgaacctaatcatgggttaagc
tcgatgtcagcaagccttgaatggttgactaattttggctttgccgtaggcgaacgtcat
tttatttgtgacagtattcaggaagttcaagaaaaatatcagcaaatcaatcaagagcgt
ccgaatttggcggttgaaattgacggaatggtcattaaggtggatgacctacaacaacaa
caaaagcttggttttttaagtcgagagccacgttgggcaacagcctataaattccccgcc
gttgctgctttgacaacagttgaaaatattgattggcaagtggggcgaactggtacatta
acccccgtagctcgtttaaaccctgtggctgtgggtggtgtcaccgtttcaaatgtgact
ttgcataatattggtgaaatccatcgtttagatgttcgaattggcgatactgtaagtgtc
tatcgcagtggtgatgtgattcctaaagttgagaaagtttggctagagtttcgtccagac
aatgtggttgaagtgcatttgcccgaaaactgtcctgtatgttcgtcacctgtagtgatg
cccgaaggtgaggctttagctcgatgttcaggcggtttgtattgttcagcacagcgtatt
gaagccattcgacactttgtttctcgtaaagcgatggacatcgaaggtctaggtgatcgt
tgggtggagtcattacttcatcttgatttattaaaagatgttgctgatatttatcactta
catgaacatcgtgaacagctattgaccattgaaaaaatgggcgaaaaatctgttcagaat
ttactggatgccattgaaaacagtaagaaaacaaccttagctgcatttatctatgcactt
ggaattcgtggcgtcggtgaaacgacagcgcgtatgcttgccaatacattccaaaccttt
gatgcaattcgccatgctgatctcgaagccttgaaaaagacaccagatgtgggtgaaatt
acagctgaatggatcgtcgattttttccaagcctcacataatcttgaagttattgatcgg
ttactggcggcaggaattcactgggatgctccaatagctccaacacgacagcctttaaat
ggtgagagttgggtgattactggaacactagcaacgatggggcgtgatgatgcgactcag
atgcttcaagctttaggtgctcgtgtgagtggcagtgtttcaagtaaaaccaaatgtgtg
gttgctggagaaaaggcgggttctaaactcgaaaaagcagaaaaattgggcattccagtg
ttggatgagcaagcctttttagcgttgatggctgattatggtcaagcttaa
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integrated database retrieval system
