Aeromonas bestiarum: IU367_15835
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Entry
IU367_15835 CDS
T08822
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abes
Aeromonas bestiarum
Pathway
abes03030
DNA replication
abes03410
Base excision repair
abes03420
Nucleotide excision repair
abes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IU367_15835 (ligA)
03410 Base excision repair
IU367_15835 (ligA)
03420 Nucleotide excision repair
IU367_15835 (ligA)
03430 Mismatch repair
IU367_15835 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abes03032
]
IU367_15835 (ligA)
03400 DNA repair and recombination proteins [BR:
abes03400
]
IU367_15835 (ligA)
Enzymes [BR:
abes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IU367_15835 (ligA)
DNA replication proteins [BR:
abes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IU367_15835 (ligA)
DNA repair and recombination proteins [BR:
abes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IU367_15835 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IU367_15835 (ligA)
MMR (mismatch excision repair)
DNA ligase
IU367_15835 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IU367_15835 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
Nlig-Ia
PTCB-BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WDL81555
LinkDB
All DBs
Position
complement(3450671..3453031)
Genome browser
AA seq
786 aa
AA seq
DB search
MSETLSRHRQLCELLIEYGHQYYVLDEPTVPDAEYDRLMRELIALEADHPELKTPASPSV
RVGGQPLTAFKQVRHEIPMLSLDNVFSSEELQAFEQRMRDRLKREISFTFCCEPKLDGLA
VSLLYVDGQLVQAATRGDGTTGEEITENVRTIKAIPLVLRGEGWPTRLEVRGEVFMPKAG
FEAMNARALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLNFYAYGVGVGGDQLGDSHFG
RLCQLKAWGLPMSQEVKLKEEAAGCQAFHDDILTRRGELAYEIDGVVYKVDAIPLQEELG
FVARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNA
DEIERLGVMIGDTVIVRRAGDVIPQIVAVVEAQRPVDACVIEFPANCPVCGSEVIQEKKI
VQQKTKIFEKILATRKCTGGLNCLAQVKESLKHFVSRNAVDIEGVGDKVIEQLVDNGLVK
HPADLFRLGVDDFLTLDGFADISAKNSFDAIQAKIGTTSSIDFLFGLGIPSVGQVVAERL
IVELGCLDNIMSAPRGIISQINGIGLDIDAEISDYFNTASVSNSVMELADVMCVERSGVP
ISTTFKRNFSIAKIIEGLNIDGIAKTFSEAISKEITLEQLCNGVYHGDLAGITTPAGTSI
SKQKIDAVVDGVKENKILLESIKHYVDKHSLLNVDALLDIEPKKSDSFIAGKSFVITGSF
TFMSRDELNSKLKSLGGESKTSVSKNTNMLIMGEKAGSKLKKATELGVKIIGEDELHSLL
EAENAL
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaccctctcccgccaccgtcaactgtgtgagctgctgattgaatacggtcat
cagtactatgtgctggacgagccgaccgtgccggacgccgaatacgatcggctgatgcgc
gaactgatcgcgctggaagccgaccatcccgagctgaagacccccgcctcccccagcgtg
cgggtcggtggtcagccgctgaccgccttcaagcaggtgcgccacgagatccccatgctg
agtctggacaacgtattcagcagcgaggagctgcaggcgttcgagcagcggatgagggat
cgcctgaagcgggagataagcttcaccttctgttgcgagcccaagctggacggtctggcg
gtgagcctgctctatgtggatggccagctggtgcaggctgccacccggggcgatggcacc
acgggcgaggagatcaccgagaacgtgcgcaccatcaaagctatcccgctcgtcctgcgg
ggcgagggctggcccacccgcttggaggtgaggggtgaggtcttcatgcccaaggccggc
ttcgaggcgatgaatgccagggcgctggcggcaggggagaaggtgttcgtcaacccgcgc
aacgccgccgcaggcagcctgcgccagctcgattcgcgcatcaccgccagccgtcccttg
aacttctatgcctatggcgtcggggtgggcggcgatcagctgggggattcccactttggt
cgcctgtgccagctcaaggcgtggggcctgcccatgagtcaggaggtgaaactcaaagag
gaggcggccggttgtcaggccttccacgatgacatcctgacccgccgtggcgagctggcc
tacgagatcgacggcgtggtctacaaggtcgatgccatccccctgcaggaggagctgggc
tttgtggcgcgggccccgcgctgggccacggcccacaagttcccggcccaggaggagatg
acactgctggagaacgtcgagtttcaggtcggccgcaccggcgccgtgaccccggtcgcc
aagctcaagccggtgtttgtcggcggcgtcaccgtctccaacgccaccctgcacaacgcc
gacgagattgagcgccttggcgtcatgatcggcgataccgtgatagtgcgccgggccggg
gacgtgatcccgcagatagtcgccgtggtggaggcgcagcgtcccgttgatgcgtgtgta
attgaatttccggccaactgcccagtttgtggttcggaggttattcaggagaaaaaaatt
gttcagcaaaagaccaaaattttcgaaaagattttggcaacccgtaaatgtactggtggt
ttaaattgtttggcacaagtcaaagaatcgttaaaacattttgttagtcgtaatgcggtt
gatattgaaggtgtcggcgacaaagttattgaacagttagtagataatggtttggttaaa
catcccgccgatctattcaggctcggtgtcgacgattttttaacgctggatggttttgct
gatatctcggcaaaaaattcatttgatgcgatccaagctaaaattggcaccacttcttca
attgattttctgtttggacttggtattccatctgtaggtcaggtggtagcagaaagattg
attgttgagttagggtgtttggataatataatgtctgccccaaggggaattattagccaa
attaatggtattggtttggatattgatgcagaaatttcagactatttcaatacagcttca
gtcagtaattcggtaatggaactggcagatgtaatgtgtgtcgaaagaagtggagtaccg
atttctacaacgtttaaacgaaatttctcgatagcaaagatcattgaaggcttaaatatt
gatggaattgctaaaacattctctgaggctatttctaaagaaattactttagaacagttg
tgtaatggcgtatatcatggtgacttggctggcataactacacctgctggcacaagtatt
agtaagcaaaagattgatgcagtggttgatggtgttaaagaaaataaaatactactggaa
tctataaaacactatgtcgataagcattcattattgaatgttgatgccttgttagatatt
gaaccaaaaaaatcagatagctttattgcgggtaagtcgttcgtgattacaggcagcttt
acattcatgtccagagatgagttaaactcgaaattaaagagcttgggtggcgagtcaaaa
acttctgtgtcaaaaaatacgaatatgttgatcatgggtgaaaaggctggcagtaaactg
aaaaaagcgactgagctcggtgtaaaaatcattggtgaggatgagctgcactcactactg
gaggctgaaaatgcattataa
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