Azospirillum brasilense Sp 7: AMK58_03875
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Entry
AMK58_03875 CDS
T04566
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abf
Azospirillum brasilense Sp 7
Pathway
abf03030
DNA replication
abf03410
Base excision repair
abf03420
Nucleotide excision repair
abf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMK58_03875
03410 Base excision repair
AMK58_03875
03420 Nucleotide excision repair
AMK58_03875
03430 Mismatch repair
AMK58_03875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abf03032
]
AMK58_03875
03400 DNA repair and recombination proteins [BR:
abf03400
]
AMK58_03875
Enzymes [BR:
abf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AMK58_03875
DNA replication proteins [BR:
abf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AMK58_03875
DNA repair and recombination proteins [BR:
abf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AMK58_03875
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMK58_03875
MMR (mismatch excision repair)
DNA ligase
AMK58_03875
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMK58_03875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
5_3_exonuc
Nlig-Ia
RNA_ligase
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ALJ34629
UniProt:
A0A0P0EL41
LinkDB
All DBs
Position
856503..858890
Genome browser
AA seq
795 aa
AA seq
DB search
MNDLFDTPAALRSIPVEELTVEQAQAELAALAQEIAHHDRLYHQQDKPEISDAAYDALVR
RNNGIEARYPELRRANSPSLRVGAAPAAAFRKVRHALPMLSLGNAFEPEEAHEFVARVRR
FLGLSDDAPLEFVAEPKIDGLSCSLRYENGRLVLAATRGDGTEGEDVTANVRTIRDVPQT
LEAPYPAVLEVRGEVYMNRDDFLAMNRAYAERGEDLFANPRNAAAGSLRQKDSTVTASRP
LCFFGYALGELSEPIADTQWGIRERLRGWGFSLNRPANLCDGAEALLTHYRKIGEERSAL
PFDIDGVVYKVNSLELQQRLGFVSRAPRWAIAHKFPAEQAQTRLKGITIQVGRTGALTPV
AELEDITVGGVVVSRATLHNEDEIARKDVRIGDLVTVQRAGDVIPQIVGVVEGQRPDDAV
PYVFPDHCPVCGSLAVREPDEAVRRCTGGLICAAQAKERLRHFVSRNAFDIEGLGEKTIE
EFWEDGLIRSPVDIFTLERRVAAGEIAILGRPGWKEKSVENLFAAINQRRARIDLHRFIF
ALGIRHIGEVTAKSLARHYGSIDGWLEGMERAVANMPGDAWRDLHALNGLGPVKADALLA
WFADPENLPKLDFYAGQEALRLDSVIKLLGIKKVDSRAAQALAERYGALADWKTAMLAAV
GAQPGPGWGELVAIPDVGEVAAEELAGFFLEERNRAIIHDLRAAGVRVADAERPKAASGS
PVAGKTVVFTGTLETMTRTEAKTRAESLGAKVAGSVSAKTDYVICGADAGSKAAKARDLG
VTILSEQEWAELIAG
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctgttcgacacccccgccgcgctccgcagcatccccgtggaggagctgacg
gtggagcaggcgcaggcggaactggccgcgctggcccaggaaatcgcccaccacgaccgg
ctctaccaccagcaggacaagccggagatttccgacgccgcctacgacgcgctggtccgc
cgcaacaacgggatcgaggcgcgctatccggagctgcgccgggccaattcgccctcgctg
cgcgtcggcgccgccccggcggcggccttccgcaaggtgcggcacgcgctgcccatgctg
tcgctcggcaacgccttcgagccggaggaggcgcacgagttcgtcgcccgcgtccgccgc
ttcctcggcctgtccgacgacgccccgctggagttcgtggccgaaccgaagatcgacggg
ctgtcctgctcgctccgctacgaaaacggccggctggttctggccgccacccgcggcgac
gggacggagggcgaggacgtgaccgccaacgtccgcaccatccgcgacgtgccgcagaca
ctggaggcgccctatcccgcggtgctggaggtgcgcggcgaggtctacatgaaccgcgac
gacttcctggcgatgaaccgcgcctacgcggagcggggggaggacctgttcgccaacccg
cgcaacgccgccgccgggtcgctgcgccagaaggattcgacggttaccgcgtcgcgcccg
ctctgcttcttcggctacgcgctgggcgagctgtcggagccgatcgccgacacccagtgg
ggcatccgcgagcggctgcgcggctggggcttctcgctgaaccgcccggccaacctgtgc
gacggcgccgaggcgctgctgacccattaccggaagatcggcgaggagcgctcggcgctg
cccttcgacatcgacggcgtggtctacaaggtcaacagcctggagcttcagcagcggctg
ggcttcgtcagccgggcgccgcgctgggccatcgcccacaagttcccggcggagcaggcg
cagacccggctgaagggcatcaccatccaggtcggccgcaccggcgccctgaccccggtg
gccgaactggaggacatcaccgtcggcggcgtggtggtcagccgcgccaccctgcacaac
gaggacgagatcgcccgcaaggacgtccgcatcggcgatctggtgacggtccagcgggcc
ggcgacgtgatcccgcagatcgtcggggtggtggaggggcagcgccccgacgacgccgtg
ccctacgtctttcccgaccattgtccggtctgcggcagcctcgccgtgcgcgaaccggac
gaggcggtgcgccgctgcaccggcgggctgatctgcgccgcccaggccaaggaacggctg
cgccatttcgtgtcgcgcaacgccttcgacatcgaaggtctgggggagaagaccatcgag
gagttctgggaggatgggctgatccgctctcccgtggacatctttacgctggagcgccgg
gtggcggcgggggagatcgccatcctcggccgtccgggctggaaggagaagtcggtcgag
aacctgttcgccgccatcaaccagcggcgcgcgcgcatcgacctgcaccgcttcatcttc
gcgctgggcatccgccacatcggcgaggtgaccgccaagtcgctggcccgccactacggc
tcgatcgacggctggctggaggggatggagcgcgccgtcgccaacatgccgggcgacgcg
tggcgcgacctgcacgccctcaacggcctcggcccggtgaaggccgacgctctgctcgcc
tggttcgccgatccggagaacctgccgaagctggacttctacgccggtcaggaggcgctg
cggctggacagcgtcatcaagctgcttggcatcaagaaggtggacagccgggccgcccag
gcgctggccgagcgctacggcgccctggcggactggaagacggcgatgctcgccgccgtc
ggcgcgcagcccggtcccggctggggtgaactggtcgccatccccgacgtcggcgaggtc
gccgcggaggaactggccggcttcttcctggaagagcgcaaccgcgccatcatccacgac
ctgcgcgccgccggcgtgcgggtggccgacgccgaacgcccgaaggcggccagcggctcg
cccgtcgccggcaagacggtggtcttcaccggcacgctggagaccatgacccgcaccgaa
gccaagacccgtgcggagtcgctgggcgccaaggtcgccggctcggtctcggccaagacc
gattacgtcatctgcggggcggacgcgggcagcaaggccgccaaggcgcgcgacctcggc
gtgaccatcctcagcgagcaggagtgggcggagctgatcgccggctga
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