Acinetobacter baumannii SDF: ABSDF2659
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Entry
ABSDF2659 CDS
T00660
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abm
Acinetobacter baumannii SDF
Pathway
abm03030
DNA replication
abm03410
Base excision repair
abm03420
Nucleotide excision repair
abm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABSDF2659 (ligA)
03410 Base excision repair
ABSDF2659 (ligA)
03420 Nucleotide excision repair
ABSDF2659 (ligA)
03430 Mismatch repair
ABSDF2659 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abm03032
]
ABSDF2659 (ligA)
03400 DNA repair and recombination proteins [BR:
abm03400
]
ABSDF2659 (ligA)
Enzymes [BR:
abm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABSDF2659 (ligA)
DNA replication proteins [BR:
abm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABSDF2659 (ligA)
DNA repair and recombination proteins [BR:
abm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABSDF2659 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABSDF2659 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABSDF2659 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABSDF2659 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
CAP01965
UniProt:
B0VU02
LinkDB
All DBs
Position
complement(2437007..2439082)
Genome browser
AA seq
691 aa
AA seq
DB search
MEKFPPLFMVNKIMAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKAL
EEQYPEFVQADSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLPNQ
KVQYEVELKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEI
PRLLEVRGEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYA
YGIAQCEPNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEI
DGMVVKVDDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLN
PVFVGGVTVSNVTLHNIGEIHRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHL
PESCPVCASPVVMPEGEALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLR
LDLLKDVADIYHLHEHRETLLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGE
TTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIH
WDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAG
SKLEKAAKLGIPVMNETDFLSLMAGYGQTLS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaatttccacccttgtttatggtgaataaaataatggcaataacttccgtgatc
gaacagatgcgtcagcttattcaactgattgcaaagcataaccatgcctactatgtcatg
gatcagccgacaatctcggacagtgaatatgatcatttatttcatcagttaaaagcttta
gaagaacaatatccggaatttgtacaagccgactcaccaacaacgaaagtaggtggtcaa
gcgctttcaaaatttgagagtgtgacacatgtggtgccaatgctttcacttggtaatgta
tttaaccaagaagacttatttgcatttgcacgccgtgtagaagagcgacttccgaaccag
aaagtacaatatgaagttgagttaaaactcgatggccttgcgatttcactatggtatgaa
aatggtgtactcgttcgcggcgtaacccgtggggatggcgaaacgggtgaagacattact
caaaatgttaaaaccattcgtaacttacctaaagttctgcattcagaaaaatatgaaata
cctcgtctacttgaagtacgtggcgaagtattgatgccaaagtctggttttgaaaaactc
aatgctgatcaagaagcaaagggagaaaaaaccttcgctaaccctcgaaatgcagccgca
ggaagtttaagacaacttgatccaaatattgctgctgctcgacctttggcattttatgcg
tatgggattgcacagtgtgaaccgaatcatggcctgacaaccatgcatgatagcttgcaa
tggttaacggaacttgggttccaaattgctgagcgtcagtacttgtgtaattcaattcaa
gaagtacagcagcgctatgagcaaattcagcaagaacgtccaaacttgcaagttgaaatt
gatggcatggtggtgaaggttgatgacctaaaacagcaacagcagcttggtttcttaagt
cgtgaaccacgctgggcaactgcttataaattcccggcacaagctgcattaactacagtt
gagcagattgactggcaagtagggcgtacagggactttgacaccagtagcacgcttaaac
cctgtttttgtaggtggtgtaactgtttctaatgtaacgttgcataatattggggaaatt
catcgtctggatgtacgcattggcgatacggtaagtgtatatcgtacgggtgacgtgatc
cctaaagtagaaaaagtttggccggagttccgtcctgctgaagcagaagttgttcattta
ccagagtcctgtccagtatgtgcttcgcctgtagtgatgcctgaaggtgaggctctcgca
cgttgttcaggcggtttatattgtgccgcacagcgtattgaagccattcgtcactttgta
tcgcgtaaagcgatggatatcgagggcttgggagatcgttgggtagaatctttattacgt
ctcgatttacttaaagatgttgctgatatttaccatttgcatgagcacagagaaactctg
ttgggcatcgaaaaaatgggagaaaagtcagtacagaacttaatagatgcgattgaagca
agtaagaaaacaactctagcacgttttatttatgcattaggtattcgtggagtaggtgaa
acaacggctagaatgttagcaaatacattccagacgcttgaggctcttaaagctgcgaat
gtagaagctttaaagaaaaccccagacgtaggggatattacagcagagtggattgctgac
tttttcttggcaccgcataatattgaagtactcgatcgtttaattgccgcaggaattcat
tgggatgcgccaacagcaccaacgcgtcagcctttaaatggtgaaagctgggtacttaca
ggtacattagagcaaatgacccgtgatcaggccactcaaatgctacaagcattaggtgca
cgagtaagtgggagtgtttctagcaaaacaaaatgtgtagttgctggtgagaaggcgggt
tcaaaattagaaaaagctgcaaagttaggtattcctgtcatgaatgaaacagatttctta
tcactcatggcaggctatgggcaaactttgagctaa
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