Alcanivorax borkumensis: ABO_1617
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Entry
ABO_1617 CDS
T00380
Symbol
nth
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
abo
Alcanivorax borkumensis
Pathway
abo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
abo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABO_1617 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abo03400
]
ABO_1617 (nth)
Enzymes [BR:
abo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ABO_1617 (nth)
DNA repair and recombination proteins [BR:
abo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ABO_1617 (nth)
Prokaryotic type
ABO_1617 (nth)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
HHH_8
Motif
Other DBs
NCBI-ProteinID:
CAL17065
UniProt:
Q0VP33
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All DBs
Position
1850810..1851448
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AA seq
212 aa
AA seq
DB search
MNREKRTEIFSRLRAQNPHPTTELEYQSDFELLVAVVLSAQATDVGVNKATARLYPVANT
PEAIFALGVDGLKEYIKTIGLFNSKAENIIQLCKILIEQHESQVPRTREELEALPGVGRK
TANVVLNTAFGYPTMAVDTHIFRVSNRTRIAPGKNVLEVEKRLVRLVPEEFLRDAHHWLI
LHGRYVCTARKPKCGECLIADLCEFPPRQRPS
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgcgaaaaacgtactgaaattttttctcgtctgcgtgcccagaatccacacccg
accaccgaactggaataccagtcggatttcgagctactggttgccgtggtgctctcagcc
caggccacggatgtgggcgtcaacaaagccaccgcgcggctatatccggtggcgaatacg
ccagaggcgattttcgctctaggtgtagatgggctcaaagagtacatcaagaccatcggc
ctgtttaattccaaggccgaaaacatcattcaactgtgtaaaatattgatcgaacagcat
gagagccaggtaccccgcacccgtgaagagctagaagcccttcccggtgttggccgcaaa
accgccaacgtggtgcttaatactgccttcggctaccccaccatggccgtggacacccac
atcttccgcgtctccaaccgcacccgcattgctccgggtaaaaatgtgctggaggtagaa
aaacgcctagtgcggctggtgccggaggagtttctacgtgacgcccatcactggctaatt
ctgcatggccgctatgtgtgcaccgcccgtaaacccaagtgcggagaatgcttgatcgct
gatctatgcgagtttccgcctcgccagcggcctagctaa
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