Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT119018
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Entry
AGABI1DRAFT119018 CDS
T03136
Symbol
AGABI1DRAFT_119018
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AGABI1DRAFT119018 (AGABI1DRAFT_119018)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abp03400
]
AGABI1DRAFT119018 (AGABI1DRAFT_119018)
Enzymes [BR:
abp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AGABI1DRAFT119018 (AGABI1DRAFT_119018)
DNA repair and recombination proteins [BR:
abp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
AGABI1DRAFT119018 (AGABI1DRAFT_119018)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
ADH_zinc_N
DNA_ligase_A_N
ADH_zinc_N_2
RNA_ligase
NAD_binding_10
Methyltransf_5
Motif
Other DBs
NCBI-GeneID:
18825518
NCBI-ProteinID:
XP_007327749
JGI:
Agabi_varbur_1_119018
UniProt:
K5XFI5
LinkDB
All DBs
Position
Unknown
AA seq
1087 aa
AA seq
DB search
MEEGIPFGLLVFPEEDGRRKYGLGRVRLMRVLERVLGVGEGVLGGGGRGERGDGDEEEDE
EEDEEDGNGWCLGLEVERVLKAKQCQSETECSSLTIAQIDELLDELSSTSTFTHSTILNK
YPTHRSKFDILKSLYRPLSPFESKFITQIILKDLHPLLYPSLNDIGYSKELMEYNTKSVR
MLRVEDVMRVWDSTGWMGRVWRVRGEMEDVVKEFEECGEDEKLRERVLKPKLGSMIKLPK
SVKGRNCYHALSYFKKSTMVWGETKYDGERAQIHVEILEDDGTSNIRIWSKSGRESTWDR
LGVHEIIRDALGLNKSGKSRVSSNRVTTARVKRNVVLDAEMVAWYKDHVDEFWRIRGLVE
QTASGPRRRTKRQRNDFDSQDEDGDSQSRHLALIFFDVLVLDDEPLLFESYATRRQHLES
LIKVIPTKAMLSDRYPIQMSPSSLILQKIFAEHLANHMEGLVLKAEESQYNEYGLPWVKL
KKDYIEGFGDCVDLVIVGASWNRDRARELRVTPNVFTTFFVGVITNRKECQLQPDLKPHI
LVYFTVSYGLSRKDLEDVNFRIKNSDNVLYPPSTKELNGLPFTFTLSSHLDCKPKTILHI
PFLAEMVFAGFDKSYGCKYYEPRFPRITKIHDKRERSWSTCMDITELDKIARECVGKDRS
EKEIDDWCKSLWGLPTSPTIGMKRQMRVDDILEKLVDVEGGLGDARRGESELKRRKLDFR
RMEDGLSLNRAVVYSQPGDPTQVLKVISLPSSYLSSSPPPGTINIRFLLSPINPADINVI
EGVYPTKPSKTEDGYYIGGNEGLARVTAVGGNSGNNGNLKVGDWVVMQRQQMGTWSMERN
VEIGDVIKIPNRKGISEVDGATITVNPPTAFNMLKDYAKLEEGDWVMQNGANSAVGQAVI
QIAAARNLKTLNFVRNRDDISQLKEQLSSLGATQVLTYDDLEDRALRSKVKEWTNGKDIR
LALNCVGGKETTAMLKYLGKEAHLVSYGAMSKQPLSLPTSAFIFKNLTAHGFWQSRWYTD
RPGEEREDLMESLTQLIRGGKLQAPQHEVVTVEKKDDDDTATNKLRQVFGRLAQGRYGKK
VLLKFGE
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atggaggagggtattccatttggattgttggtgtttccggaggaagatgggaggaggaag
tatgggttggggagggtcaggttgatgagggttttggagagggttttgggggttggggag
ggggttttggggggaggtgggcgaggtgagcgaggtgatggagatgaggaggaggatgag
gaggaggatgaggaggatgggaatggatggtgtttgggattggaagtcgaaagagtattg
aaagcaaaacagtgtcaatcggaaactgaatgttcgtcgttgactattgctcagatagat
gaactcttggatgaattatcttcaacatcaacattcacgcattcaactatcctcaataaa
tatccaactcatcgttcgaaattcgatatcctaaaatccctatatcgtcctctatctccc
ttcgaaagcaaattcataactcaaataatattaaaagaccttcaccctctgttataccct
tccctcaacgatatcgggtattcgaaggaattgatggagtataatacgaaatcggtaagg
atgttgagggtggaggatgttatgcgtgtttgggattcgacggggtggatgggaagggta
tggagagtgagaggggagatggaagatgttgtgaaggagtttgaggaatgtggtgaagat
gagaagttgagagagagagttttgaaaccaaaattgggaagtatgataaagttaccgaag
agtgtgaagggaaggaattgttatcatgctttatcgtatttcaaaaaatcaacgatggtg
tggggtgaaacgaaatatgatggtgaacgtgcgcagattcatgttgagatacttgaagat
gatgggacttcaaatatcaggatttggagtaagagtgggagggagtcgacttgggatagg
ttgggtgttcatgagattattcgagatgcgcttggtttgaataagagcgggaagtcgagg
gtatcttctaatcgggtgacgactgcgagagtgaagaggaatgttgtgttggatgcggag
atggtggcttggtataaagatcatgttgatgaattttggaggattcgtggtcttgttgaa
caaaccgcttctggacctcgccgtagaaccaagcgtcaacgtaatgattttgactctcaa
gacgaagacggtgactcccaatcccgacatctagcattaattttctttgacgttctagtc
ttggatgacgaacctctccttttcgaatcttacgccacacgtcgtcaacacctcgaatct
ctcatcaaagtgatacctacaaaagccatgctctccgacagatatccaattcaaatgtct
ccttcctctcttattttacaaaaaatattcgctgaacatttagcgaatcatatggaaggg
ttggttttgaaagctgaggaatcgcaatataatgaatatggacttccttgggtcaagttg
aagaaggattatattgaggggtttggggattgtgtggatttggttattgtgggtgcgagt
tggaatcgggatcgagctagggaacttcgtgtcacgcctaatgttttcacaactttcttt
gtgggtgttataactaatcgcaaagagtgtcaactccagcctgacctaaagccccacatc
ctcgtatacttcacggtatcttacggcctcagccggaaggacctcgaggatgtgaacttt
cggataaaaaacagtgacaacgtgttgtatcctccatctaccaaggaactcaatggtcta
ccgttcacgtttactctgtcttcgcatttggattgtaaaccaaagactatacttcatata
ccgttcttggcggaaatggtgtttgctgggtttgataaatcatatggatgtaaatattat
gaaccgaggttcccgaggataactaaaatccatgataaacgagaacgttcatggtcaacg
tgtatggatatcaccgaactcgataaaatagcaagagaatgtgttgggaaagataggtcg
gagaaggagattgatgattggtgtaaatcgttgtggggattgccgacgtcaccgacgata
ggtatgaaacgacagatgagggttgatgatattttggaaaagcttgtggatgttgaaggc
ggtttgggggatgcgaggcgaggtgaatcggagttgaaaaggaggaagttggattttcgt
cgtatggaggatgggttgtcgcttaatcgcgctgttgtgtattctcaacctggcgatccg
acacaagttctcaaagtcatttcactcccttcatcatacctttcttcttctcctccacct
ggaaccatcaacattcgattcttactctctcctataaatccagcagatatcaacgtcatt
gaaggtgtataccctacgaaacctagtaaaactgaggatgggtattatattggtgggaat
gagggtttagctagggttactgctgttggtggtaacagtggtaataatgggaatttaaaa
gttggggattgggttgtgatgcagagacaacagatggggacttggtctatggagagaaat
gttgaaatcggggatgtgattaagattccgaataggaaagggatttccgaggtggatggt
gctactattacggtcaatcctccgacggcgtttaacatgttgaaggattatgcgaaattg
gaagaaggagattgggttatgcagaatggagctaatagcgctgtaggacaagctgtcata
cagatagccgctgcgcgtaatttgaaaactctcaactttgtacgaaatcgtgacgatatt
tcgcaactcaaagaacaattaagtagccttggagctactcaagtgctcacttatgatgat
ttggaggacagagctttacgtagtaaagtcaaagaatggacaaatggcaaggacatccgt
ttagctctaaactgcgttggcggaaaagaaacaacagcaatgctcaaatatttaggcaaa
gaagcccacctcgtctcctacggagccatgtccaaacaacctctatccttacccacttca
gcattcatattcaaaaatctaaccgcccatggattttggcaaagtcgttggtacaccgac
cgtccgggcgaggaaagagaagacttgatggagtcactgacgcagctcatcagaggcggc
aagcttcaagcgcctcagcacgaggttgttacggttgagaagaaggatgatgacgatacg
gcgacgaataaacttcgacaagtctttgggagactcgcacaaggtagatatggaaagaag
gttcttctcaagtttggcgagtga
DBGET
integrated database retrieval system
