Acinetobacter baumannii MDR-TJ: ABTJ_03013
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Entry
ABTJ_03013 CDS
T02045
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abr
Acinetobacter baumannii MDR-TJ
Pathway
abr03030
DNA replication
abr03410
Base excision repair
abr03420
Nucleotide excision repair
abr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABTJ_03013
03410 Base excision repair
ABTJ_03013
03420 Nucleotide excision repair
ABTJ_03013
03430 Mismatch repair
ABTJ_03013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abr03032
]
ABTJ_03013
03400 DNA repair and recombination proteins [BR:
abr03400
]
ABTJ_03013
Enzymes [BR:
abr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABTJ_03013
DNA replication proteins [BR:
abr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABTJ_03013
DNA repair and recombination proteins [BR:
abr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABTJ_03013
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABTJ_03013
MMR (mismatch excision repair)
DNA ligase
ABTJ_03013
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABTJ_03013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AFI96595
LinkDB
All DBs
Position
complement(3083928..3085964)
Genome browser
AA seq
678 aa
AA seq
DB search
MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP
TTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLPNQKVQYEVELKLDGL
AISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMP
KSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLT
TMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQ
QQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVT
LHNIGEIHRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHL
HEHRETLLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTL
EALKAANVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHWDAPTAPTRQPLN
GESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPV
MNETDFLSLMAGYGQTLS
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcaataacttccgtgatcgaacagatgcgtcagcttattcaactgattgcaaagcat
aaccatgcctactatgtcatggatcagccgacaatctcggacagtgaatatgatcattta
tttcatcagttaaaagctttagaagaacaatatccggaacttgtacaagccgactcacca
acaacaaaagtaggtggtcaagcgctttcaaaatttgagagtgtgacgcatgtggtcccc
atgctttcacttggtaatgtatttaaccaagaagacttatttgcatttgcacgccgtgta
gaagagcgacttccgaaccagaaagtacaatatgaagttgagttaaaactcgacggcctt
gcgatttcactatggtatgaaaatggtgtacttgttcgcggtgtaacccgtggggatggc
gaaacgggggaagacattactcaaaacgttaaaactattcgtaacttacctaaagttctg
cattcagaaaaatatgaaatacctcgtctacttgaagtacgtggtgaagtattgatgcca
aagtctggttttgaaaaactcaatgctgaccaagaagcaaagggagaaaaaaccttcgct
aaccctcgaaatgcagccgcaggaagtttaagacaacttgatccaaatattgctgctgct
cgacctttggcattttatgcgtatgggattgcacagtgtgaaccgaatcatggcctgaca
accatgcatgatagcttacaatggttaacggaacttgggttccaaattgctgagcgtcag
tacttgtgtaattcaattcaagaagtacagcagcgctatgagcaaattcagcaagaacgt
ccaaacttgcaagttgaaattgatggcatggtggtgaaggttgatgacctaaaacaacaa
cagcagcttggtttcttaagtcgtgaaccacgctgggcaactgcttataaattcccggca
caagctgcattaactacagttgagcagattgactggcaagtagggcgtacagggactttg
acccctgtagcacgcttaaaccctgtttttgtgggtggtgtgactgtttctaacgtaacg
ttgcataatattggggaaattcatcgtctggatgtacgcattggcgatacggtaagtgta
tatcgtacgggtgacgtgattcctaaagtagaaaaagtttggccggagttccgtcctgct
gaagcagaagttgttcatttaccagagtcctgcccagtatgtgcttcgcctgtagtgatg
cctgaaggtgaggctctcgcacgttgttcaggcggtttatattgtgccgcacagcgtatt
gaagccattcgtcactttgtatcgcgtaaagcgatggatatcgagggcttgggagatcgt
tgggtagaatctttattacgtctcgatttacttaaagatgttgctgatatttaccatttg
catgagcacagagaaactctcttgggcatcgaaaaaatgggagaaaagtcagtacagaac
ctaatagatgcgattgaagcaagtaagaaaacaactctagcacgttttatttatgcatta
ggtattcgtggagtaggtgaaacaacggctagaatgttagcaaatacatttcagacgcta
gaggcacttaaagctgcgaatgtagaagctttaaagaaaaccccagatgtaggggatatt
acagcagagtggattgctgactttttcttggcaccgcataacattgaagtactcgatcgt
ttaattgccgcaggaattcattgggatgcaccaacagcaccaacgcgtcaacctttaaat
ggtgaaagctgggtacttacaggtacattagaacaaatgacccgtgatcaggccactcaa
atgctacaagcattaggtgcacgagtaagtgggagtgtttctagcaaaacaaaatgtgta
gttgctggtgagaaggcgggttcaaaattagaaaaagctgcgaagttaggtattcccgtc
atgaatgaaacagatttcttatcactcatggcaggctatgggcaaactttgagctaa
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