Azospirillum baldaniorum Sp245: AZOBR_180112
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Entry
AZOBR_180112 CDS
T02152
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abs
Azospirillum baldaniorum Sp245
Pathway
abs03030
DNA replication
abs03410
Base excision repair
abs03420
Nucleotide excision repair
abs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AZOBR_180112 (ligA)
03410 Base excision repair
AZOBR_180112 (ligA)
03420 Nucleotide excision repair
AZOBR_180112 (ligA)
03430 Mismatch repair
AZOBR_180112 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abs03032
]
AZOBR_180112 (ligA)
03400 DNA repair and recombination proteins [BR:
abs03400
]
AZOBR_180112 (ligA)
Enzymes [BR:
abs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AZOBR_180112 (ligA)
DNA replication proteins [BR:
abs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AZOBR_180112 (ligA)
DNA repair and recombination proteins [BR:
abs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AZOBR_180112 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AZOBR_180112 (ligA)
MMR (mismatch excision repair)
DNA ligase
AZOBR_180112 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AZOBR_180112 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
5_3_exonuc
Nlig-Ia
RNA_ligase
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CCC99042
UniProt:
A0A9P1JSQ0
LinkDB
All DBs
Position
complement(2601275..2603662)
Genome browser
AA seq
795 aa
AA seq
DB search
MNDLFDTPAALRSIPVEELTVEQAQAELAALAQEIAHHDRLYHQQDKPEISDAAYDALVR
RNNGIEARYPELRRADSPSLRVGAAPAAAFRKVRHALPMLSLGNAFEPEEAHEFVARVRR
FLGLSDDAPLEFVAEPKIDGLSCSLRYENGRLVLAATRGDGTEGEDVTANVRTIKDVPQA
LEAPFPAVLEVRGEVYMNRDDFLAMNRAYAERGEDLFANPRNAAAGSLRQKDSKITASRP
LCFFGYALGELSEPIADTQWGIRERLRGWGFSLNRPANLCDGAEALLTHYRKIGEERSAL
PFDIDGVVYKVNSLELQQRLGFVSRAPRWAIAHKFPAEQAQTRLKGITIQVGRTGALTPV
AELEDITVGGVVVSRATLHNEDEIVRKDVRIGDLVTVQRAGDVIPQIVGVVEGQRPDDAV
PYVFPDHCPVCGSLAVREPDEAVRRCTGGLICAAQAKERLRHFVSRNAFDIEGLGEKTIE
EFWEDGLIRSPVDIFTLERRVEAGEIAILGRPGWKEKSVENLFAAINQRRERIDLHRFIF
ALGIRHIGEVTAKSLARHYGSIDGWLEGMERAVANMPGEAWRDLHALSGLGPVKADALLA
WFADPENLPKLDFYAGPEALRLDSVIKLLGIKKVDSRAAQALAERYGTLAEWKAAMLAAV
GAQPGPGWGELVAIPDVGEVAAEELAGFFQEERNRAIIDDLRAAGVRVADAERPKAASGS
PVAGKTVVFTGTLETMTRTEAKTRAESLGAKVAGSVSAKTDYVICGADAGSKAAKARDLG
VTILSEQEWAELIAG
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctgttcgacacccccgccgcgctccgcagcatccccgtggaggagctgacg
gtggagcaggcgcaggcggaactggccgcgctggcccaggagatcgcccaccatgaccgg
ctctaccaccagcaggacaagccggagatttccgacgccgcctacgatgcgctggtccgc
cgcaacaacgggatcgaggcgcgctatccggagctgcgccgggccgattcgccgtcgctg
cgcgtcggcgccgccccggcggcggctttccgcaaggtgcggcacgcgctgcccatgctg
tcgctcggcaacgccttcgagccggaggaggcgcacgagttcgtcgcccgcgtccgccgc
ttcctcggcttgtccgacgacgccccgctggagttcgtggccgagccgaagatcgacggg
ctgtcctgctcgctgcgctacgaaaacggccggctggtcctggccgccacccgcggcgac
gggacggagggcgaggacgtgaccgccaacgtccgcaccatcaaggacgtgccgcaggcc
ctggaggcgccgttccccgcggtgctggaggtgcgcggcgaggtctacatgaaccgcgac
gacttcctggcgatgaaccgcgcctatgcggagaggggcgaggatctgttcgccaacccg
cgcaacgccgccgccgggtcgctgcgccagaaggactcgaagatcaccgcgtcgcgcccg
ctctgcttcttcggctacgcgctgggcgagctgtcggagccgatcgccgacacccaatgg
ggcatccgcgagcggttgcgcggctggggcttctcgctgaaccgcccggccaacctgtgc
gacggtgccgaggcgctgctgacccattaccgcaagatcggtgaggagcgctcggcgctg
cccttcgacatcgacggggtggtctacaaggtcaacagcctggagcttcagcagcggctg
ggcttcgtcagccgggcgccgcgctgggccatcgcccacaaattcccggccgagcaggcg
cagacccggctgaagggcatcaccatccaggtcggccgcaccggcgccctgaccccggtg
gcggagttggaggacatcaccgtcggcggcgtggtggtcagccgcgccaccctgcacaac
gaggacgagatcgtccgcaaggacgtccgcatcggcgatctggtgaccgtccagcgggcc
ggcgacgtgatcccgcagatcgtcggggtggtggaggggcagcgccccgacgacgccgtg
ccctacgtcttccccgaccattgcccggtctgcggcagcctcgccgtgcgcgagccggac
gaggcggtgcgccgctgcaccggcggcctgatctgcgccgcccaggccaaggagcggctg
cgccatttcgtgtcgcgcaacgccttcgacatcgaagggctgggcgagaagaccatcgag
gagttctgggaggacgggctgatccgttcccccgtggacatcttcacgctggagcgccgg
gtggaagcgggggagatcgccatcctcggccgtccgggctggaaggagaagtcggtcgag
aacctgttcgccgcgatcaaccagcggcgtgagcgcatcgacctgcaccgcttcatcttc
gcgctgggcatccgccacatcggcgaggtgaccgcaaagtccctggcccgccattacggc
tcgatcgacggctggctggaggggatggagcgtgccgtcgccaacatgccgggggaggcg
tggcgcgacctgcacgcgctgagcgggctcggcccggtgaaggccgacgctctgctcgcc
tggttcgccgacccggagaatctgccgaagctggacttctacgccggtccggaggcgctg
cggctggacagcgtcatcaagctgctcggcatcaagaaggtggacagccgcgccgcccaa
gcgctggccgaacgctacggcacgctggcggagtggaaggcggcgatgctggccgccgtt
ggtgcgcagcccggccccggctggggcgagctggtcgccatccccgacgtgggcgaggtc
gctgccgaggagctggccggcttcttccaggaggagcgcaaccgcgccatcatcgacgac
ctgcgcgccgcgggcgtgcgggtggccgacgccgagcgcccgaaggcggccagcggttcc
cccgtcgccggcaagacggtggtcttcaccggcacgctggaaaccatgacccgcaccgag
gcgaagacccgcgcggagtcgctgggggccaaggtcgccggctcggtctcggccaagacc
gattacgtcatctgcggggcggacgcggggagcaaggccgccaaggcgcgcgacctgggc
gtgaccatcctcagcgagcaggagtgggccgagctgatcgccggctga
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